PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g53753.1.p
Common NameBRADI_1g53753
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 338aa    MW: 37358.3 Da    PI: 11.2841
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g53753.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.63.6e-14120173154
               AP2   1 sgykGVrwdkkrgr...WvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54 
                       ++ykGVr+++ +g    WvAeIrdps    +   r +lg+f t+e+Aa+a+ +ar+++ 
  Bradi1g53753.1.p 120 CQYKGVRRRS-SGDgagWVAEIRDPS----SlpGRRWLGTFATPEQAAAAYNQARQEID 173
                       68*****988.56679********96....255688*******************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.07E-13120168No hitNo description
PfamPF008474.7E-7120173IPR001471AP2/ERF domain
PROSITE profilePS5103216.871121182IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-16121173IPR001471AP2/ERF domain
SMARTSM003801.6E-8121185IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-10121172IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MDGDQVVAAG GKGKKVAADQ GQGEGKKRKA GRWGKKVGGQ PRYSKVRIFQ GERDPDATDS  60
SSDQAEREAC RARNEPLPAK LLGTVKRVLR PPVVEKESKP LVRPRPVPAA EKGKRKQKSC  120
QYKGVRRRSS GDGAGWVAEI RDPSSLPGRR WLGTFATPEQ AAAAYNQARQ EIDARKHLAS  180
PPSPRLFLLR PRPRPRRLFR LLRRQRHSCF SCLLLVPDPE KLVPRRRGKG KKKLSEQQQE  240
EKAVLFPAVV PEKLVPRRRG MGRKKKTTEQ EKENAVLLAP LPVPAPAGPA RPEKLVPRRR  300
YGPEMKLKEP AACGGDGVPA LIHIGDVDEA GCVFTWV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113127KRKQKSCQYKGVRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g53753.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0Q3S5A30.0A0A0Q3S5A3_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3715823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.17e-11ERF family protein