PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g52480.2.p
Common NameBRADI_1g52480, LOC100845355
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 639aa    MW: 70397.2 Da    PI: 5.8017
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g52480.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM142.13.3e-44141491128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkya..tgkrknratksgyWkatgkd 89 
                       lp+GfrF+Ptdeelv +yLk k++g++++   vi++vd+ ++ePwdLp k  +k+++ ew+fF++rd+ +   ++ r+nr+t++gyWkatgkd
  Bradi1g52480.2.p  14 LPVGFRFRPTDEELVRHYLKGKIAGHRHPDLLVIPDVDLSSCEPWDLPsKsVIKSDDPEWFFFARRDRPKYpgKSPRSNRSTAAGYWKATGKD 106
                       79*************************999899**************96446777888********99655234569**************** PP

               NAM  90 kevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       + + s+    +++l+g+kktLvf++grap+g +t W++heyr+
  Bradi1g52480.2.p 107 RLIRSSssnnNKTLIGIKKTLVFHRGRAPRGLRTPWIIHEYRA 149
                       ****9977766667***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-505170IPR003441NAC domain
PROSITE profilePS5100551.78914170IPR003441NAC domain
PfamPF023651.7E-2415148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 639 aa     Download sequence    Send to blast
MGKAVAMSAA AEVLPVGFRF RPTDEELVRH YLKGKIAGHR HPDLLVIPDV DLSSCEPWDL  60
PSKSVIKSDD PEWFFFARRD RPKYPGKSPR SNRSTAAGYW KATGKDRLIR SSSSNNNKTL  120
IGIKKTLVFH RGRAPRGLRT PWIIHEYRAA EPSFQSGRNG SFVLYRLFNK QDGETPSKSS  180
RSDLQNGGDD QDKATTSMTS DLSLLTATKP TTTDHSMTTN LITAVDGDRV SHEDAFLDVL  240
TQLPDLHADQ RYDGFPNISS PMRPYTDHPF VGNMGDQDFS AYFDSIIAEQ NIQDMLLHPD  300
YAEMDKHPAG NTESDPTALV TSTANSNSMA PLEDSWREDY YDQRADDTDA TRCLSALSTL  360
QSDTSGHNHE TRPQTNIMYG GANLASQCYS QCQLPLALDP QTESSHISGD LWNPYAQHLL  420
DSMLEPSSSD MINSEASNGQ GGWAVPPSMQ QSEVQDFIDL QQGTAARRVR LVCGVQRAPA  480
SQLIITPHLK SEDEAGSCCS TGSSSNSHDE DYANAGSRTM AGDMMHIEDT GHIPTQVASL  540
VKVTDKLQHL SLSEDMPEHI KMPRRHGAGL TQRLKHDSAQ SVHQDLLQNS NHVPGESSSE  600
TTGRSTGSVV RLLWLALLVM APLLVLVGVW SSLNYWQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-3811721170Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g52480.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010228157.10.0protein NTM1-like 9
TrEMBLA0A0Q3NRI20.0A0A0Q3NRI2_BRADI; Uncharacterized protein
STRINGBRADI1G52480.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134132529
Representative plantOGRP1274945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.35e-58NAC transcription factor-like 9