PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g52240.1.p
Common NameBRADI_1g52240, LOC100841394
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRAS
Protein Properties Length: 538aa    MW: 55916.1 Da    PI: 6.1147
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g52240.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS215.43e-661715362374
              GRAS   2 velLlecAeavssgdlelaqalLarlsel......aspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                       v+ Lle+A+  ++gd + a+++Larl+++        p g  p+ R+aa +  AL  rl+  +s+  + ++p+++ + +++ +laa+k+  ++
  Bradi1g52240.1.p 171 VDELLEAARLADAGDSTGAREILARLNHHgllppsPPPPGhPPLLRAAALLRDALLLRLLPPGSGSGS-VRPQPS-PLDVALKLAAHKAMADA 261
                       678*************************988775433445469******************6666553.444444.46799************ PP

              GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa..sRp....egppslRiTgvgspesgskeeleetgerLakfAeelgv 174
                       sP ++f+ +t  qa l+a+ g+  vH +Dfd++ G++Wp+L+q+La  sR+    ++++ l++T+++s +sgs  el+  +e L++fA+ lg+
  Bradi1g52240.1.p 262 SPAVQFASFTSTQAFLDAA-GAGGVHLVDFDLGFGAHWPPLMQELAhsSRRaspsAPAAALKLTALVS-ASGSPMELRLSQESLTRFAADLGI 352
                       *****************95.8899**********************7656566655567*********.778********************* PP

              GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
                       pfef +l+ +  + +    L+++ +E++aV++ +   +         s  +++L+l+k+l+P +vv+v++   + + ++  + l+ l+  +al
  Bradi1g52240.1.p 353 PFEFAALTFDPSSPM--PGLSLSADETVAVHVTVGGVTSA------VS--PATLRLIKQLRPAIVVCVDHGGGC-DMPLPSHALNVLRSSAAL 434
                       ******966655554..78999*********999665554......33..689******************999.99**************** PP

              GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveees.gsl 358
                       ++sl+a+ ++  +  +kvE+++l+++++  +  +g +      +l  Wr+ + +aGF p++ls+ a++qa++llr+++ s+g++ e+++ g+l
  Bradi1g52240.1.p 435 LESLAAG-GASPDVVTKVEQFVLRPRVERGLVPAGGD------KLPPWRSLFASAGFAPLQLSNAAEAQAECLLRRTAaSHGFHAEKRQpGEL 520
                       ****999.6666999**************99999998......8******************************************8852778 PP

              GRAS 359 vlgWkdrpLvsvSaWr 374
                        l+W++ +LvsvSaWr
  Bradi1g52240.1.p 521 ALCWRRSELVSVSAWR 536
                       8**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098533.625144514IPR005202Transcription factor GRAS
PfamPF035141.0E-63171536IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MSSSSRGNLN NQDLDGGAAA KRLRGSSSSS KSPPEPTSVL YNRSPSPPTS SSHSSSAAPE  60
PPPISAEDWD AVFLSAGPAM AVPASAAPHH SQAQEDSSFL RWIMDTGYAD GDADAFGFKS  120
STGAAFFDPS FLNPQSPAPQ QQQEELFALP QQLPLPAVAQ REEILEPQGA VDELLEAARL  180
ADAGDSTGAR EILARLNHHG LLPPSPPPPG HPPLLRAAAL LRDALLLRLL PPGSGSGSVR  240
PQPSPLDVAL KLAAHKAMAD ASPAVQFASF TSTQAFLDAA GAGGVHLVDF DLGFGAHWPP  300
LMQELAHSSR RASPSAPAAA LKLTALVSAS GSPMELRLSQ ESLTRFAADL GIPFEFAALT  360
FDPSSPMPGL SLSADETVAV HVTVGGVTSA VSPATLRLIK QLRPAIVVCV DHGGGCDMPL  420
PSHALNVLRS SAALLESLAA GGASPDVVTK VEQFVLRPRV ERGLVPAGGD KLPPWRSLFA  480
SAGFAPLQLS NAAEAQAECL LRRTAASHGF HAEKRQPGEL ALCWRRSELV SVSAWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-2425453679375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g52240.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010228145.10.0scarecrow-like protein 22
TrEMBLI1H2230.0I1H223_BRADI; Uncharacterized protein
STRINGBRADI1G52240.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145372224
Representative plantOGRP1407444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45160.14e-50GRAS family protein