PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g51980.1.p | ||||||||
Common Name | BRADI_1g51980, LOC100844103 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | TALE | ||||||||
Protein Properties | Length: 458aa MW: 50754.3 Da PI: 8.4516 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 26.7 | 9.7e-09 | 271 | 308 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ ++ LA+++gL+ +qV++WF N R + Bradi1g51980.1.p 271 FEHflHPYPNDVDKHILARQTGLSRSQVSNWFINARVR 308 5544589*****************************88 PP | |||||||
2 | BELL | 96.3 | 2.6e-31 | 129 | 197 | 4 | 72 |
BELL 4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +lq++ka+Lls+++eVd+rY++y+eq+++ sF+avag g+a++Yt+lA++a+SrhFr+L+da++ q+ Bradi1g51980.1.p 129 ALQRRKARLLSMVQEVDRRYRRYREQMRATELSFDAVAGTGAAQVYTKLAMRAMSRHFRSLRDALVRQV 197 69****************************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.4E-40 | 60 | 195 | IPR006563 | POX domain |
Pfam | PF07526 | 2.7E-38 | 66 | 193 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.758 | 249 | 312 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.05E-11 | 252 | 313 | No hit | No description |
SMART | SM00389 | 8.2E-9 | 252 | 316 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.34E-17 | 253 | 319 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.0E-27 | 255 | 318 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.1E-17 | 269 | 308 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 458 aa Download sequence Send to blast |
MMAHHHHLLD FSFSSSSPLA PFHHADTTPW PPPTHATVVG HERGLPYYYT APPTTMPAMT 60 QPALLLNSSR YMGPARELLA ELCSLTDHAA RTPKAGGGQW DVEANYSASW DNNSNPGALL 120 SYSSMDLLAL QRRKARLLSM VQEVDRRYRR YREQMRATEL SFDAVAGTGA AQVYTKLAMR 180 AMSRHFRSLR DALVRQVRAL RKTMGEGDTT GGLFAAPGAS RGDTPRLRVL DQCLRQQRAF 240 QQSGGTTESY PWRPQRGLPE RAVAVLRSWL FEHFLHPYPN DVDKHILARQ TGLSRSQVSN 300 WFINARVRLW KPMIEEMYTE EETKEQGGGN GGGKTIPDDH HGNTGAAWAA TRPITGEIPP 360 HRLGGSSCFV SAAPIIPAND GQQLFHSYLS SNGGAVSLTL GLQQRQQQPA MMIMQQRSSS 420 LMLGAGDQEE EEDVVLPYRN LMGSELLHDL ADPIVYN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 6e-15 | 258 | 316 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 6e-15 | 258 | 316 | 5 | 63 | Homeobox protein Meis2 |
4xrm_A | 6e-15 | 258 | 316 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 6e-15 | 258 | 316 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g51980.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003557261.1 | 0.0 | homeobox protein BEL1 homolog isoform X1 | ||||
TrEMBL | I1H1Z1 | 0.0 | I1H1Z1_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G51980.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6398 | 35 | 47 | Representative plant | OGRP133 | 16 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41410.1 | 9e-71 | TALE family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g51980.1.p |
Entrez Gene | 100844103 |