PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g49980.10.p
Common NameBRADI_1g49980, LOC100829624
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family BBR-BPC
Protein Properties Length: 328aa    MW: 36403.1 Da    PI: 9.9884
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g49980.10.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind376.64.4e-11513271301
          GAGA_bind   1 mdddgsre..rnkg.yye........paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkl 81 
                        md+ g+re  r+++ +y+        p++++k++ +++l+++++erd++i er++al+ekkaa+aerdmaf+qr++a+ ern+a+verdn+l
  Bradi1g49980.10.p   1 MDNIGHREngRQRPdQYKglhtqwmiPQRQMKDHHSMNLLALMSERDNAIMERDHALAEKKAALAERDMAFAQRESAMVERNAAIVERDNAL 92 
                        9999999999****9*********99889*************************************************************** PP

          GAGA_bind  82 lalllvensla...salpvgvqvlsgtksidslqqlse.....pqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekka 164
                        +al+l++++     + +++  ++lsgtk+ ++++qls+     +ql+ds+++  +e++++ea+pi+ a  +a + k++kk++++  ++ +  
  Bradi1g49980.10.p  93 AALELARTNGFnvnNGNGFPAGSLSGTKNFHHHDQLSHaqsspRQLADSPYDhSKEMHISEAYPISIASGNAGKIKRSKKNSSPPMKRPSGV 184
                        ***99988766566889999***************888899999********999************************9999888888887 PP

          GAGA_bind 165 kkkkkksekskkkvkkesader......skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkr 250
                         +k+kk + ++++v +++  e+      +k+e+k++dl+ln+v++Des++P+P CsCtG+lrqCYkWGnGGWqS+CCt+++S+yPLPv++++
  Bradi1g49980.10.p 185 LRKTKKATGDWRDVGMSGGGEDparesvMKNEWKDQDLGLNQVAYDESSMPAPSCSCTGKLRQCYKWGNGGWQSSCCTMSMSMYPLPVMPNK 276
                        79999999******99986655677888**************************************************************** PP

          GAGA_bind 251 rgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                        r+aR++grKmS++af+klL++La+eG+dls+ vDLkdhWAkHGtn+++tir
  Bradi1g49980.10.p 277 RHARMGGRKMSGSAFTKLLSRLAGEGHDLSTSVDLKDHWAKHGTNRYITIR 327
                        **************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012264.4E-1521327IPR010409GAGA-binding transcriptional activator
PfamPF062176.7E-951327IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MDNIGHRENG RQRPDQYKGL HTQWMIPQRQ MKDHHSMNLL ALMSERDNAI MERDHALAEK  60
KAALAERDMA FAQRESAMVE RNAAIVERDN ALAALELART NGFNVNNGNG FPAGSLSGTK  120
NFHHHDQLSH AQSSPRQLAD SPYDHSKEMH ISEAYPISIA SGNAGKIKRS KKNSSPPMKR  180
PSGVLRKTKK ATGDWRDVGM SGGGEDPARE SVMKNEWKDQ DLGLNQVAYD ESSMPAPSCS  240
CTGKLRQCYK WGNGGWQSSC CTMSMSMYPL PVMPNKRHAR MGGRKMSGSA FTKLLSRLAG  300
EGHDLSTSVD LKDHWAKHGT NRYITIR*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g49980.10.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003557130.10.0barley B recombinant-like protein D
RefseqXP_010228059.10.0barley B recombinant-like protein D
RefseqXP_010228060.10.0barley B recombinant-like protein D
RefseqXP_010228061.10.0barley B recombinant-like protein D
RefseqXP_010228062.10.0barley B recombinant-like protein D
RefseqXP_010228063.10.0barley B recombinant-like protein D
SwissprotQ5VSA80.0BBRD_ORYSJ; Barley B recombinant-like protein D
TrEMBLI1H1910.0I1H191_BRADI; Uncharacterized protein
STRINGBRADI1G49980.30.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62263756
Representative plantOGRP28411331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.23e-89basic pentacysteine 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]