![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bradi1g49630.1.p | ||||||||
Common Name | BRADI_1g49630, LOC100822666 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 632aa MW: 66995.1 Da PI: 6.3763 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 376 | 4.7e-115 | 235 | 609 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPi 90 lv++L+ cAe + +g++e+a+ +Larl e asp+g +p++Rlaayf+eALa r a ++++l++ pp++ ++ + ++e + al++++ v+Pi Bradi1g49630.1.p 235 LVRALMVCAESLGAGNHEAANYYLARLGESASPSGpTPLHRLAAYFAEALAIRAATTWPHLFHVSPPRHLTDLTddEEEDAVALRVLNSVTPI 327 6899*************************************************************999998766568888889999******* PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182 ++f h+t N+ +l++++g++rvH+iDfdi+qGlQWp+Llq+La+R+ ++p+++RiTgvg+ sk el+etg rL+ +A++lg+ fef+++v Bradi1g49630.1.p 328 PRFLHFTLNERLLREFDGHDRVHVIDFDIKQGLQWPSLLQSLAARRpDPPAHVRITGVGP----SKLELQETGARLSAVAASLGLAFEFHAVV 416 *******************************************66637888*********....***************************99 PP GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsl.ea 273 + rled++l++L+vk+gE +aVn+vl+ hrll++ ++++ +L+l +s+ ++++ + e+ea+ n++++ rf++al++y+alfd++ +a Bradi1g49630.1.p 417 ELRLEDVRLWMLHVKRGERVAVNCVLAAHRLLRDGGAMAA----FLSLARSTGADLLLLGEHEAEGlNGGRWEPRFARALRHYAALFDAVgAA 505 99******************************99999999....********************999***********************99* PP GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg.yrve...eesgslvlgW 362 +l ++s +ri+ E++ ++rei+n+va ega+r erhe + +Wr+r+e+ GF+++ +++++a+q +++ r+v+ g y v ++ + l+l W Bradi1g49630.1.p 506 GLDAASPARINAEEM-FAREIRNAVAFEGADRCERHEGFPQWRRRMEDGGFRNAGFGDREAMQGRMIARMVAPPGnYGVRaqgDDGEGLTLQW 597 ***************.*******************************************************9544477764444466677*** PP GRAS 363 kdrpLvsvSaWr 374 d+pL++vSaW+ Bradi1g49630.1.p 598 LDNPLYTVSAWT 609 ***********6 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 55.892 | 209 | 585 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.6E-112 | 235 | 609 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 632 aa Download sequence Send to blast |
MLAGFSLSSR HQMSSTAQRL PCGFSKRGGR GHGEGGAAAP RVAGDGRGGS SGACSFRAHP 60 APPVSQAVSW GATATAKPEP CVGDVGGGGW ERRSRALKRA HDEAAAVDEQ EEGEYGAVAR 120 AKRTRMMGGA GDEVWFHKSI AGPMPMIQAA AGGEEEEEEE KVFLVPSAAA FPHGMIHAAA 180 AGAGTSTLAP AKEEEYSKSP SSHSSSSSGT DGGSSAAMPL VMASSSQPEL EALELVRALM 240 VCAESLGAGN HEAANYYLAR LGESASPSGP TPLHRLAAYF AEALAIRAAT TWPHLFHVSP 300 PRHLTDLTDD EEEDAVALRV LNSVTPIPRF LHFTLNERLL REFDGHDRVH VIDFDIKQGL 360 QWPSLLQSLA ARRPDPPAHV RITGVGPSKL ELQETGARLS AVAASLGLAF EFHAVVELRL 420 EDVRLWMLHV KRGERVAVNC VLAAHRLLRD GGAMAAFLSL ARSTGADLLL LGEHEAEGLN 480 GGRWEPRFAR ALRHYAALFD AVGAAGLDAA SPARINAEEM FAREIRNAVA FEGADRCERH 540 EGFPQWRRRM EDGGFRNAGF GDREAMQGRM IARMVAPPGN YGVRAQGDDG EGLTLQWLDN 600 PLYTVSAWTP AGDGAGSTVS ASTTASHSLQ S* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 4e-56 | 242 | 610 | 25 | 379 | Protein SCARECROW |
5b3h_D | 4e-56 | 242 | 610 | 25 | 379 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that acts as positivie regulator of brassinosteroid (BR) signaling (PubMed:19220793, PubMed:22685166). Functions downstream of BRI1 and GSK2 to modulate BR responses. Acts as a direct target of GSK2 kinase to mediate BR responses (PubMed:22685166). Involved in feedback inhibition of BR biosynthetic genes. Repressed by BZR1 (PubMed:19220793). {ECO:0000269|PubMed:19220793, ECO:0000269|PubMed:22685166}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bradi1g49630.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Down-regulated by 24-epibrassinolide. {ECO:0000269|PubMed:19220793}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003557108.1 | 0.0 | protein DWARF AND LOW-TILLERING | ||||
Swissprot | Q9LWU9 | 0.0 | DLT_ORYSJ; Protein DWARF AND LOW-TILLERING | ||||
TrEMBL | I1H154 | 0.0 | I1H154_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G49630.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6404 | 34 | 55 | Representative plant | OGRP5507 | 15 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G63100.1 | 1e-117 | GRAS family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bradi1g49630.1.p |
Entrez Gene | 100822666 |
Publications ? help Back to Top | |||
---|---|---|---|
|