PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g48635.1.p
Common NameBRADI_1g48635
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 637aa    MW: 73103.3 Da    PI: 8.2143
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g48635.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR146.81e-1463141290
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                       fYn Y+ e GF vr sk++k+ + g   +++ vC++eg++ +++++         + r gC+a++++ +++d+ w+++ +++eHnH+l+
  Bradi1g48635.1.p  63 FYNLYSWEHGFGVRHSKTRKN-QFGYRNMHEIVCQCEGRSLTKSSA---------SCRSGCHAMIRLLRTDDHGWYISMFHSEHNHPLS 141
                       9****************9999.6666999*********99886655.........99******************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.8E-1163141IPR004330FAR1 DNA binding domain
PfamPF105511.6E-22237330IPR018289MULE transposase domain
PROSITE profilePS509669.878507552IPR007527Zinc finger, SWIM-type
PfamPF044344.3E-7523550IPR007527Zinc finger, SWIM-type
SMARTSM005751.2E-5527554IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 637 aa     Download sequence    Send to blast
MDNTVKLLTE RKCAVDGPDH RISPSTVSPF ENAIAKSRDR SSPEIFIPAI GTTFNSCQEA  60
YGFYNLYSWE HGFGVRHSKT RKNQFGYRNM HEIVCQCEGR SLTKSSASCR SGCHAMIRLL  120
RTDDHGWYIS MFHSEHNHPL SVGCCGKMQW NSHNEIDPLA LDFIKKLGEN NISLGKLYNI  180
IKSMKDDIGK TMEILNAMKQ NDNETEIMVD VDSDNRMKAI LWCKGKNRED YSYFGDVVTF  240
DTTYRTNMYN MPFGLYVGVN EHFQSTIFGG VLMCEETAAA FEWAFESFIK IMGGKHPITI  300
LTGQPMQGHE SSYKKTMPDT KHRWCRWHVL RDAKEKLGNV YSKHSCFKSE FHGIINEEVC  360
VLNFEKRWEE LLVKYDVVDN SYLQLLYKKR RMRARPYFMG VFCAGMTSTQ RSESANHVLK  420
HFITRSSPMH LFVRQYNNLL KSRRAEEARE EHSTSLRCRV LKHGMPIETD AAVYKIFTQE  480
LFMSASFVAK ELENSSSFEV RSAGSLLDVS VDSTTHKVDR LTDGSMVKCS CGWFEHSGLI  540
CRHALKVLVR CDVQKIPPGN IMRRWTTRAR EAKNNTPSVT EEGETSEKNS YRHNLLCMAM  600
YDLSQDASLS EEGFELVMTA ISTARKNLSD LNRDRPA
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g48635.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0Q3JP220.0A0A0Q3JP22_BRADI; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.19e-67FAR1-related sequence 5