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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g48580.1.p | ||||||||
Common Name | BRADI_1g48580, LOC100823943 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | NAC | ||||||||
Protein Properties | Length: 201aa MW: 21742.8 Da PI: 8.5008 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 90.9 | 2.2e-28 | 13 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.tksgyWkatgkdkev 92 lp GfrF Ptdeel +yL kk+ + +l+ ++i+ +d+ +++P dLp + + + + +fFs+ + + r a ++g+Wka+g ++ v Bradi1g48580.1.p 13 LPNGFRFVPTDEELTIHYLYKKAFSLPLPN-NIIAVADLARIHPGDLPGN--EAHGDKFFFSRPVPRCGRRARGAAApGAAGVWKASGAEELV 102 699************************999.89***************32..3445789**99998876655555532449**********99 PP NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 l++ ++ + lk+tLvf++ + + +t+Wvmheyrl Bradi1g48580.1.p 103 LVSpRRVPTALKQTLVFFSVDGRGVARTRWVMHEYRL 139 99868888**********99999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.18E-37 | 6 | 165 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 36.755 | 13 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.0E-18 | 14 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MALPMAGGGL MGLPNGFRFV PTDEELTIHY LYKKAFSLPL PNNIIAVADL ARIHPGDLPG 60 NEAHGDKFFF SRPVPRCGRR ARGAAAPGAA GVWKASGAEE LVLVSPRRVP TALKQTLVFF 120 SVDGRGVART RWVMHEYRLH PNVLLATANN GRAVEDWVVC RVFQKATRAQ RRGDGNPPSP 180 ISSCLTEEIG DEDSDEEIAS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-28 | 11 | 171 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-28 | 11 | 171 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-28 | 11 | 171 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-28 | 11 | 171 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-28 | 11 | 171 | 18 | 174 | NAC domain-containing protein 19 |
3swm_B | 3e-28 | 11 | 171 | 18 | 174 | NAC domain-containing protein 19 |
3swm_C | 3e-28 | 11 | 171 | 18 | 174 | NAC domain-containing protein 19 |
3swm_D | 3e-28 | 11 | 171 | 18 | 174 | NAC domain-containing protein 19 |
3swp_A | 3e-28 | 11 | 171 | 18 | 174 | NAC domain-containing protein 19 |
3swp_B | 3e-28 | 11 | 171 | 18 | 174 | NAC domain-containing protein 19 |
3swp_C | 3e-28 | 11 | 171 | 18 | 174 | NAC domain-containing protein 19 |
3swp_D | 3e-28 | 11 | 171 | 18 | 174 | NAC domain-containing protein 19 |
4dul_A | 3e-28 | 11 | 171 | 15 | 171 | NAC domain-containing protein 19 |
4dul_B | 3e-28 | 11 | 171 | 15 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g48580.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003561060.1 | 1e-146 | NAC domain-containing protein 83 | ||||
TrEMBL | I1H0S9 | 1e-145 | I1H0S9_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G48580.1 | 1e-146 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8233 | 30 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-26 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g48580.1.p |
Entrez Gene | 100823943 |