PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g46060.1.p | ||||||||
Common Name | BRADI_1g46060, LOC100825896 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bZIP | ||||||||
Protein Properties | Length: 329aa MW: 35492.5 Da PI: 8.2089 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 49.2 | 1.2e-15 | 248 | 299 | 5 | 55 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk.eleelkke 55 +r+rr++kNRe+A rsRqRK+a+i eLe +v++L++ N++L+k ++e+lk++ Bradi1g46060.1.p 248 RRQRRMIKNRESAARSRQRKQAYIMELEAEVAKLKEHNEELQKkQVEMLKEQ 299 79*************************************9964156777765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.3E-13 | 244 | 302 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.45 | 246 | 298 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 2.90E-26 | 248 | 300 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.5E-15 | 248 | 303 | No hit | No description |
SuperFamily | SSF57959 | 3.13E-11 | 248 | 297 | No hit | No description |
Pfam | PF00170 | 7.7E-14 | 248 | 299 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 251 | 266 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048316 | Biological Process | seed development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MEMPGGSGAP ALARQGSIYS LTFDEFQSAL GGAGKDFGSM NMDELLRNIW TAEESNAIAA 60 AATATTAVPA SNVDAQPPQP QQQAILRQGS LTLPRTLSQM TVDEVWRDIM GFCDDEPEAP 120 VPAQLPAQAQ RQPTLGAMTL EEFLVRAGVV REDMGGQTVV VPARAQALFP QSNVVTPTMQ 180 VGNGMVHGVV GQGAGGGMTV AAPATPGVLN GFGKVEGGDL SSLSPVPYPF DSAMRVRKGP 240 TVEKVVERRQ RRMIKNRESA ARSRQRKQAY IMELEAEVAK LKEHNEELQK KQVEMLKEQK 300 NEVVERISQQ LGPKAKRFCL RRTLTGPW* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in abscisic acid (ABA) signaling pathway (PubMed:20576316, PubMed:19947981, PubMed:21546455, PubMed:22301130, PubMed:26300907, PubMed:27468891). Transcription factor activity is fully activated by ABA (PubMed:19947981, PubMed:26300907, PubMed:27468891). Acts as positive regulator of the expression of abiotic stress-responsive genes through an ABA-dependent signaling pathway (PubMed:20576316). Acts as positive regulator of ABA signaling and drought stress tolerance (PubMed:22301130). Plays an important role in ABA and auxin responses. Involved in ABA signaling and stress responses by directly binding to the ABA-responsive element (ABRE)-containing genes, especially WRKY family genes. Modulates response to auxin. Suppresses auxin signaling by targeting ABRE-containing genes related to auxin metabolism or signaling (PubMed:21546455). {ECO:0000269|PubMed:19947981, ECO:0000269|PubMed:20576316, ECO:0000269|PubMed:21546455, ECO:0000269|PubMed:22301130, ECO:0000269|PubMed:26300907, ECO:0000269|PubMed:27468891}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00294 | DAP | Transfer from AT2G36270 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g46060.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) (PubMed:20576316, PubMed:18315698, PubMed:21546455, PubMed:22301130). Induced by auxin (PubMed:21546455, PubMed:22301130). Induced by gibberellin (PubMed:21546455). Induced by salt and drought stresses (PubMed:20576316, PubMed:21546455, PubMed:22301130). Induced by cold stress (PubMed:20576316). Induced by oxidative stress (PubMed:20576316, PubMed:22301130). {ECO:0000269|PubMed:18315698, ECO:0000269|PubMed:20576316, ECO:0000269|PubMed:21546455, ECO:0000269|PubMed:22301130}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK363330 | 0.0 | AK363330.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2014H23. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003564107.1 | 0.0 | bZIP transcription factor 46 | ||||
Swissprot | Q69TW5 | 1e-144 | BZP46_ORYSJ; bZIP transcription factor 46 | ||||
TrEMBL | I1GZV5 | 0.0 | I1GZV5_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G46060.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP706 | 38 | 147 | Representative plant | OGRP540 | 15 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56850.1 | 1e-44 | ABA-responsive element binding protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g46060.1.p |
Entrez Gene | 100825896 |