PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g45220.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | TCP | ||||||||
Protein Properties | Length: 498aa MW: 51558.5 Da PI: 10.1828 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 128.9 | 4.9e-40 | 146 | 328 | 1 | 134 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.... 88 aa+k+++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s ss Bradi1g45220.2.p 146 AAPKRTTSKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSMLSSIpahl 238 689*******************************************************************99976777777766322224666 PP TCP 89 ..........................................kaaksaakskksqksaasalnlakesr.akarar.are.rtrekmrikn 134 ++++s ++ + +a l+++ +s+ a a+ + +r+ r++++ ++++ Bradi1g45220.2.p 239 raaglqtgllgsgsrfgggaraeawdrfmglgfdggpastvtSSSSSPLLLSFHSGTSA-GLDVSPSSSsAAANNDlSRKrRWEQELQQQQ 328 77777888888888888889999999999999999999998644444443333333332.3555553331333222344434444433333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.7E-43 | 151 | 331 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.598 | 153 | 207 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008283 | Biological Process | cell proliferation | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0010029 | Biological Process | regulation of seed germination | ||||
GO:0010229 | Biological Process | inflorescence development | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 498 aa Download sequence Send to blast |
MLLPLPSHRP PVLPATHTRA PPPPPSPPSP HHLTSPLSNP TTTAWYVRTS PTHRSNSPGQ 60 KKKGQQSIDR SCLCRAVLYV GLWPNRETMD VTGDAAGGGR RLPLQLLEKK EDQSYLQPCS 120 TSPAAAALGA GGTNGQLQQV ARKASAAPKR TTSKDRHTKV DGRGRRIRMP AICAARVFQL 180 TRELGHKTDG ETIEWLLQQA EPAVIAATGT GTIPANFTSL NISLRSSGSM LSSIPAHLRA 240 AGLQTGLLGS GSRFGGGARA EAWDRFMGLG FDGGPASTVT SSSSSPLLLS FHSGTSAGLD 300 VSPSSSSAAA NNDLSRKRRW EQELQQQQQM QYQQQMAGYT VTQSQMPGGG TVWMVPTTSN 360 AQPGATQAGG ESIWTTFPQP GSGGGVGGAA AVYRGVPSGL HFMNLPAPMA LLPGGQAAQH 420 LGLGQAQAGG GGSAGEGHMG ILAALNAYRG QHAAAASEVT VAGQHNGAAE GGSQHHHQHQ 480 QHGGGERNES MSASDDS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved the regulation of plant development. Together with TCP15, modulates plant stature by promoting cell division in young internodes. Represses cell proliferation in leaf and floral tissues (PubMed:21668538). Together with TCP15, acts downstream of gibberellin (GA), and the stratification pathways that promote seed germination. Involved in the control of cell proliferation at the root apical meristem (RAM) by regulating the activity of CYCB1-1 (PubMed:25655823). Involved in the regulation of seed germination. May regulate the activation of embryonic growth potential during seed germination (PubMed:17953649, PubMed:22155632). Acts together with SPY to promote cytokinin responses that affect leaf shape and trichome development in flowers (PubMed:22267487). Transcription factor involved in the regulation of endoreduplication. Represses endoreduplication by activating the gene expression of the key cell-cycle regulators RBR1 and CYCA2-3 (PubMed:25757472). Regulates the expression of the defense gene pathogenesis-related protein 2 (PR2) in antagonism to SRFR1, a negative regulator of effector-triggered immunity (PubMed:24689742). Involved in positive regulation of plant defense. Represses jasmonate (JA) response to promote disease resistance. Regulates the plant immune system by transcriptionally repressing a subset of JA-responsive genes (PubMed:28132837). {ECO:0000269|PubMed:17953649, ECO:0000269|PubMed:21668538, ECO:0000269|PubMed:22155632, ECO:0000269|PubMed:22267487, ECO:0000269|PubMed:24689742, ECO:0000269|PubMed:25655823, ECO:0000269|PubMed:25757472, ECO:0000269|PubMed:28132837}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00396 | DAP | Transfer from AT3G47620 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g45220.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced during seed imbibition (PubMed:17953649). Circadian-regulation with the lowest expression in the middle of the dark period (PubMed:17953649). {ECO:0000269|PubMed:17953649}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK064240 | 9e-94 | AK064240.1 Oryza sativa Japonica Group cDNA clone:002-105-B01, full insert sequence. | |||
GenBank | AP003513 | 9e-94 | AP003513.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0690H04. | |||
GenBank | AP003569 | 9e-94 | AP003569.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0425F05. | |||
GenBank | AP014962 | 9e-94 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012614 | 9e-94 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014755137.1 | 0.0 | transcription factor TCP15 | ||||
Swissprot | Q93Z00 | 4e-45 | TCP14_ARATH; Transcription factor TCP14 | ||||
TrEMBL | A0A2K2DPG4 | 0.0 | A0A2K2DPG4_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G45220.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3744 | 34 | 79 | Representative plant | OGRP2699 | 12 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69690.1 | 3e-43 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g45220.2.p |
Publications ? help Back to Top | |||
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