PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g44520.1.p
Common NameBRADI_1g44520, LOC100821685
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family E2F/DP
Protein Properties Length: 432aa    MW: 48187.9 Da    PI: 6.5448
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g44520.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP72.16.3e-2351116171
           E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                       rk+ksL+ll+++f++l+ + + ++v l+++a++L    v  +rRRiYDi+NVLe+++++ +++kn+++w+g
  Bradi1g44520.1.p  51 RKQKSLGLLCSNFVALYDRDDVETVGLDDAARRL---GV--ERRRIYDIVNVLESVGILVRRAKNRYTWIG 116
                       79****************9999************...**..****************************98 PP
2E2F_TDP78.75.6e-25207287171
           E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                       rkeksL+lltq+f+kl+ + e ++++l+e+a+ L+ e     ++++k+RR+YDi+NVL++lnliek     ++k+++rw g
  Bradi1g44520.1.p 207 RKEKSLGLLTQNFVKLFLTMEVETISLDEAARLLLGErhaesNMRTKVRRLYDIANVLSSLNLIEKtqqvdSRKPAFRWLG 287
                       79****************************************************************9999999******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.3E-2547117IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.26E-1650115IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013728.6E-2951116IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023197.7E-2152116IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.8E-23204288IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.4E-32207287IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.1E-20208287IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.25E-12209287IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032876Biological Processnegative regulation of DNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MDSAAGAEAS AAATQAQPLP PYQPPPRLVL EGDGSGLGGA ARAFRHHAYS RKQKSLGLLC  60
SNFVALYDRD DVETVGLDDA ARRLGVERRR IYDIVNVLES VGILVRRAKN RYTWIGFEGV  120
PAALKELKER ALREMSGLVS PLLEEPSATN VSDDEDEDDK LGDADGDAES EKLSQSMDTT  180
SDKLSQSMDT TSDKPDTPRC QLRSDHRKEK SLGLLTQNFV KLFLTMEVET ISLDEAARLL  240
LGERHAESNM RTKVRRLYDI ANVLSSLNLI EKTQQVDSRK PAFRWLGQAK RKEGDDVTVA  300
LPPTRTILSN KRAFGTDITN IDTKRSKWDS GTENKSKLMQ GDGSMSRTFE NQLGQGKSSG  360
FVYGPFHPAG ARKQELDRAL REKERKNIQD WENLTKSLQY QNPTINGLFG HYAEAWRSWY  420
LDFTRDDPST S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A2e-37502793228Transcription factor E2F8
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1379384LREKER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00397DAPTransfer from AT3G48160Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g44520.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3753581e-165AK375358.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3092B12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564010.10.0E2F transcription factor-like E2FE
TrEMBLI1GZC30.0I1GZC3_BRADI; Uncharacterized protein
STRINGBRADI1G44520.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31853884
Representative plantOGRP24741634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.21e-102DP-E2F-like 1