 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Bradi1g43220.1.p |
| Common Name | BRADI_1g43220, LOC100823662 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
| Family |
CO-like |
| Protein Properties |
Length: 402aa MW: 43869.6 Da PI: 4.8354 |
| Description |
CO-like family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Bradi1g43220.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-B_box | 18.5 | 4.1e-06 | 4 | 45 | 5 | 40 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
C+ ++e++ +C+++ lC +C + H+ Ht++
Bradi1g43220.1.p 4 LCDYCGEHRSMVYCRSDAASLCLSCDRNVHSAnalsrrHTRT 45
6******99*********************657888889876 PP
|
| 2 | zf-B_box | 25.9 | 2e-08 | 47 | 89 | 5 | 41 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
C+++ ++++ C + ++ lC++C ++H+ H++++
Bradi1g43220.1.p 47 LCDRCASQPAMVRCLEENTSLCQNCDWNGHSAgspdagHKRQN 89
7*****************************6688999998876 PP
|
| 3 | CCT | 62.6 | 1.2e-21 | 345 | 388 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44
R+ a++RYkeK+k+RkF+ kirYesRKa+A+ R+RvKGrFvk+
Bradi1g43220.1.p 345 RDSAITRYKEKKKRRKFDHKIRYESRKARADVRKRVKGRFVKAG 388
899**************************************985 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 402 aa
Download sequence Send
to blast |
MGALCDYCGE HRSMVYCRSD AASLCLSCDR NVHSANALSR RHTRTLLCDR CASQPAMVRC 60
LEENTSLCQN CDWNGHSAGS PDAGHKRQNI NCYSGCPSSA ELSRVWSFIL DIPNVAPEPN 120
CEQVISMMSI SDSAVSNEDN APGGNSFLDI ASATLSSDHN NDDKLKTVIG SSSEAGVNLL 180
PHATGQTAVS VDSTTAKVPY TPDKHMFSKD TIYEDFSMDD IDLSYENYEE LFGNSHIQTE 240
ELFDDAGIDS YFEMKEVLAG SSDEQPKPMQ PAASNAVSAD SGMSNPGVKD DSSLCIPVRQ 300
ALSFSGFTAE SNAGDYQDCG VSSLLLMGEP PWLPPGPDGS FAGIRDSAIT RYKEKKKRRK 360
FDHKIRYESR KARADVRKRV KGRFVKAGEA YDYDPLDTRS Y*
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 354 | 358 | KKKRR |
| 2 | 354 | 359 | KKKRRK |
| 3 | 355 | 359 | KKRRK |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK253130 | 0.0 | AK253130.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf114k16, mRNA sequence. |
