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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Bradi1g42040.4.p |
| Common Name | BRADI_1g42040, LOC100829075 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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| Family |
HB-other |
| Protein Properties |
Length: 361aa MW: 40042.8 Da PI: 7.4226 |
| Description |
HB-other family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Bradi1g42040.4.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 27.2 | 6.7e-09 | 13 | 75 | 6 | 56 |
S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS
Homeobox 6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56
+ft+ ++ e+ee+ + n p ++ ++ LA+k +++ +qV +WFqNrR+ ++
Bradi1g42040.4.p 13 RFTHAEVAEMEEHLRHlnNAIPHRDVIQGLADKFtasparagkiSVQPKQVWNWFQNRRYSQR 75
69999*******999554999*********************99****************998 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 361 aa
Download sequence Send
to blast |
MGRPPSSGGP AFRFTHAEVA EMEEHLRHLN NAIPHRDVIQ GLADKFTASP ARAGKISVQP 60
KQVWNWFQNR RYSQRNRTTR GAPLPQGKML PTGAADEHHS ASFGAQSASS VYPTGKNSSN 120
GGQVDFEAKS ARDGAWYDVA HFLSHRLFET GEPEVRVRFS GFGAEEDEWI NVRKCVRQRS 180
LPCEPTECVA VLPGDLILCF QEGKEQALYF DARILDAQRR RHDVRGCRCR FLVRYDHDHS 240
EEIVPLRKVC RRPDNGFRQH ILHANRVAAS AQDVHMGIQI DRSSAEQKPQ KPHKMMDVNT 300
DEVTMVPKVE PTDKPVVSLP AASISTRGDS SSDVTMKDAG ATPEVEAADE GQGDKMNAGE 360
*
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4iuq_A | 1e-47 | 126 | 254 | 6 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuq_B | 1e-47 | 126 | 254 | 6 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iur_A | 1e-47 | 126 | 254 | 6 | 134 | SHH1 SAWADEE |
| 4iur_B | 1e-47 | 126 | 254 | 6 | 134 | SHH1 SAWADEE |
| 4iut_A | 1e-47 | 126 | 254 | 6 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iut_B | 1e-47 | 126 | 254 | 6 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuu_A | 1e-47 | 126 | 254 | 6 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuu_B | 1e-47 | 126 | 254 | 6 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuv_A | 1e-47 | 126 | 254 | 6 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuv_B | 1e-47 | 126 | 254 | 6 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | May play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT3G18380.1 | 1e-101 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding |
