PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g40407.3.p
Common NameBRADI_1g40407, LOC100843440
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family CPP
Protein Properties Length: 491aa    MW: 53953.8 Da    PI: 7.595
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g40407.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR43.85e-1468106241
               TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                       +kk+CnCk+s+Clk+YCeCfaag +C+  C+C++C N+ e
  Bradi1g40407.3.p  68 RKKQCNCKNSHCLKLYCECFAAGLYCDG-CNCKQCGNRVE 106
                       689*************************.********987 PP
2TCR50.44.6e-16150189140
               TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                       k++kgC+Ckks ClkkYCeCf+a+  Cs++CkC dCkN e
  Bradi1g40407.3.p 150 KHNKGCHCKKSGCLKKYCECFQANILCSKNCKCMDCKNFE 189
                       589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011148.7E-1367107IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.37668190IPR005172CRC domain
PfamPF036388.8E-1169104IPR005172CRC domain
SMARTSM011146.0E-19150191IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.4E-12153188IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MEPEEQQMVQ PPVSASAPAA ELKVPSHQPP PKPAASTQPA MPVPRPWPVA FTPMKPMVEV  60
KSGTPQKRKK QCNCKNSHCL KLYCECFAAG LYCDGCNCKQ CGNRVENEKA RQEAINNTKQ  120
RNPKAFQPKI ENVSNTLSVR KDAGVPSFPK HNKGCHCKKS GCLKKYCECF QANILCSKNC  180
KCMDCKNFEG SEELQAIIQG YNASDRNNIQ QATNVTLNGP IGSSGHKCSP ACRRHPDDPL  240
GSEANHVDAS QVASSTGLEG CIGNYHSKSK MFYRNFCRSP LAHTIHPTDV NDLANHLVIV  300
CRKATEAFLT IADHKVEIDV ERTSCTKTDL NNDKMKNQEV QKAVVRQPDE ATYIDHRNVG  360
DLESPCSNSQ EDSRPASPGT QALMCDEQGT AFGTDYRSSF PMALHDQDTS ELNGVQEKTV  420
LTGFRDYLRL VITRGKINEG NILSESAMEL EDQRHQSVST NLLPLKAVEK PKSPDDSENP  480
KASEPSSSNC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-266919911132Protein lin-54 homolog
5fd3_B1e-266919911132Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g40407.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010227668.10.0protein tesmin/TSO1-like CXC 5 isoform X1
TrEMBLA0A0Q3H5T70.0A0A0Q3H5T7_BRADI; Uncharacterized protein
STRINGBRADI1G40407.20.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-86Tesmin/TSO1-like CXC domain-containing protein