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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g36236.1.p | ||||||||
Common Name | BRADI_1g36236, LOC100832625 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | G2-like | ||||||||
Protein Properties | Length: 329aa MW: 36087.2 Da PI: 6.1329 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 97.9 | 7.3e-31 | 47 | 101 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++rlrWt eLH rF++a++qLGG+++AtPk il++m+v+gLt+ hvkSHLQkYRl Bradi1g36236.1.p 47 RQRLRWTDELHGRFLDALTQLGGPDRATPKGILRTMGVQGLTICHVKSHLQKYRL 101 58****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.822 | 44 | 104 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.09E-17 | 46 | 102 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.4E-29 | 46 | 102 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.6E-25 | 48 | 102 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.0E-5 | 49 | 100 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 6.5E-21 | 133 | 179 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MYEPKPLSST GSAHNNPIPH NQQIVPTANN AASNIGGNSS NINFATRQRL RWTDELHGRF 60 LDALTQLGGP DRATPKGILR TMGVQGLTIC HVKSHLQKYR LSKYIPDPTA DGAKSDKKEL 120 GNLLAGIESS PGMELSEALK LQMEVQKRLR DQLEVQRQLQ LRIEAQGKYL QKIMEEQQRL 180 TGVLCESGTL NALVPVQELR QDFNKTDPLT PVPTSEPLIR DKASTVSDDH EGTDGLLKDL 240 SSHDECHSSG REPLTPDSSC GAASPLDIPR DRLDHQNSES VLHHNILESR SGSDFQQASS 300 VFPSSTRRSD SPAALYVSED DFKNSPDV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 4e-20 | 47 | 104 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 4e-20 | 47 | 104 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 4e-20 | 47 | 104 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 4e-20 | 47 | 104 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 4e-20 | 47 | 104 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 4e-20 | 47 | 104 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 4e-20 | 47 | 104 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 4e-20 | 47 | 104 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 4e-20 | 47 | 104 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 4e-20 | 47 | 104 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 4e-20 | 47 | 104 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 4e-20 | 47 | 104 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g36236.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003563637.1 | 0.0 | myb family transcription factor PHL7 isoform X2 | ||||
Refseq | XP_014754863.1 | 0.0 | myb family transcription factor PHL7 isoform X2 | ||||
Refseq | XP_024312887.1 | 0.0 | myb family transcription factor PHL7 isoform X1 | ||||
Refseq | XP_024312888.1 | 0.0 | myb family transcription factor PHL7 isoform X2 | ||||
Swissprot | Q9SJW0 | 5e-87 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | A0A0Q3L3I9 | 0.0 | A0A0Q3L3I9_BRADI; Uncharacterized protein | ||||
TrEMBL | I1GXE0 | 0.0 | I1GXE0_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G36236.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 1e-87 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g36236.1.p |
Entrez Gene | 100832625 |