PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g36200.1.p
Common NameBRADI_1g36200
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 325aa    MW: 34665.1 Da    PI: 4.2392
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g36200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM51.92.5e-16151483127
               NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                       p f+F+Ptd++lv +yL +++ g + + e+++ e+d   + Pw+  +     ++++ +++ +fF +   +   g+  +r+   gyW+ +g++ 
  Bradi1g36200.1.p  15 PEFKFDPTDDDLVAHYLLPRALGLPGPHEHAVIEADPGGLPPWEVLEahgidMFSGADNQAFFFGPVPDA---GRMVRRVKGGGYWQGQGSQG 104
                       679**********************88888899***********96335676666688899***998775...678888999*****998854 PP

               NAM  91 e..vlsk.....kgelvglk.ktLvfykgrapkgektdWvmheyr 127
                       +  v++      ++ +v  k   L+fy+ ++ + +++  vmhe+ 
  Bradi1g36200.1.p 105 DdgVVVFlrgdgSEVDVRFKmYNLTFYESKEAE-KSSGFVMHEFV 148
                       322333356754333455553579***776666.799******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.67E-226164IPR003441NAC domain
PROSITE profilePS5100522.87313165IPR003441NAC domain
PfamPF023651.8E-1315148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MEAARLGFNQ PGLSPEFKFD PTDDDLVAHY LLPRALGLPG PHEHAVIEAD PGGLPPWEVL  60
EAHGIDMFSG ADNQAFFFGP VPDAGRMVRR VKGGGYWQGQ GSQGDDGVVV FLRGDGSEVD  120
VRFKMYNLTF YESKEAEKSS GFVMHEFVIV DPPLPGTVLT RIRFDKAKER RAAKLAKESV  180
RAGKQPVADG GGDALFNGGV YYGAPLGVVF PGSGDFSGGG CYFPDLDTQL DQSTSYSQAE  240
CDEYYQYQQQ QYQQFIRFQM EQQCWQAGDP SNGGEGYSGG GGAGEEQQQQ QQAGGVFCGG  300
GYDAGSSDVG TGSTISYCGD GAAS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g36200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229803.10.0NAC transcription factor NAM-B1
TrEMBLI1GXD40.0I1GXD4_BRADI; Uncharacterized protein
STRINGBRADI1G36200.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1861527
Representative plantOGRP1194335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.15e-06NAC domain containing protein 25