PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g35420.2.p | ||||||||
Common Name | LOC104582140 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 165aa MW: 17875.5 Da PI: 7.0893 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 29.4 | 2e-09 | 14 | 57 | 4 | 51 |
AP2 4 kGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaark 51 kGVr +gr++AeIrd + ++++lg+f + + Aa a++ a++ Bradi1g35420.2.p 14 KGVRTLA-NGRYAAEIRDkV-----AgRKVWLGTFPSLKLAACAYELAAR 57 8999555.9*********33.....35********************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.09E-13 | 11 | 73 | No hit | No description |
PROSITE profile | PS51032 | 13.788 | 12 | 71 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-11 | 12 | 77 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.14E-11 | 13 | 71 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.9E-15 | 14 | 72 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.1E-4 | 14 | 57 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MCQAFGGEPK KNLKGVRTLA NGRYAAEIRD KVAGRKVWLG TFPSLKLAAC AYELAARGML 60 SGGRHAVPNF QQTPSPALRA EFDDELAAQA LRYREADGGG RPVPACLLRF ARVPVPPVEE 120 FPEQPPFTVE GPGCEITFVR SIPPEPVYIE AVEESYLATP TCTW* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g35420.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010229790.1 | 1e-117 | dehydration-responsive element-binding protein 2A | ||||
TrEMBL | A0A0Q3NJI3 | 1e-115 | A0A0Q3NJI3_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G35420.1 | 1e-117 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP49868 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24590.1 | 2e-10 | DORNROSCHEN-like |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g35420.2.p |
Entrez Gene | 104582140 |