PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g35030.1.p
Common NameBRADI_1g35030, LOC100833862
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family DBB
Protein Properties Length: 290aa    MW: 30779.4 Da    PI: 5.0573
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g35030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.21.1e-05444539
          zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                       C+ ++ ++++  C  ++  lC  C    H+       H++
  Bradi1g35030.1.p  4 QCDVCGVEPATVLCCADEAALCSACNRRVHRAnklagkHRR 44
                      7***************************9*76777777775 PP
2zf-B_box26.61.3e-0861100437
          zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 
                       + C+ ++e + + fC +++  lC+dC + +H+       H
  Bradi1g35030.1.p  61 PLCDVCKERRGIVFCVEDRAILCADCDEPIHSAndltakH 100
                       78*****************************655566555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.513147IPR000315B-box-type zinc finger
SMARTSM003361.1E-7147IPR000315B-box-type zinc finger
CDDcd000214.46E-5347No hitNo description
PROSITE profilePS501199.31458105IPR000315B-box-type zinc finger
SMARTSM003362.4E-1658105IPR000315B-box-type zinc finger
CDDcd000217.12E-861105No hitNo description
PfamPF006434.2E-661101IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009640Biological Processphotomorphogenesis
GO:0009641Biological Processshade avoidance
GO:0005634Cellular Componentnucleus
GO:0000989Molecular Functiontranscription factor activity, transcription factor binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MRVQCDVCGV EPATVLCCAD EAALCSACNR RVHRANKLAG KHRRLALQQP SSPTNATAAG  60
PLCDVCKERR GIVFCVEDRA ILCADCDEPI HSANDLTAKH SRFLLVGAKL SAAELVDQDH  120
QIPSPDGSPD EHENSSSCAA NGAEDSAPPV LNGVGGGGGG GSSISEYLTN ICPGWRVEDL  180
LLDDAAFASK QKGRDDEVPF LDADLFDVVA AGARPEKRGG AWDQAPHVPQ PAWASLEEVV  240
PAPKAKAKQQ QGRVREWYHS DSDSDVFAVP EISPTPPAKR ARPSPFWCL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g35030.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3632771e-118AK363277.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2013O17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003563555.10.0B-box zinc finger protein 20
TrEMBLI1GWZ60.0I1GWZ6_BRADI; Uncharacterized protein
STRINGBRADI1G35030.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121002430
Representative plantOGRP1271444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.16e-53salt tolerance homolog2