PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g32977.2.p
Common NameBRADI_1g32977, LOC100846486
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 387aa    MW: 43507.3 Da    PI: 10.3254
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g32977.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.23.2e-091540126
                      --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                      ykt+lC  ++r+++C++G++C FaHg
  Bradi1g32977.2.p 15 YKTKLCALWQRSHHCPRGASCGFAHG 40
                      9************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.1E-14848IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.98E-81345IPR000571Zinc finger, CCCH-type
SMARTSM003560.00481441IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.8311442IPR000571Zinc finger, CCCH-type
PfamPF006427.8E-71540IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MREMADPPPH RGPAYKTKLC ALWQRSHHCP RGASCGFAHG GAELRKPPPH SSFPPRIGPP  60
GRRDHRTHDF RGRPERRNSP RGRYSPERDT RGHLFHGQNR RPSSRDRGSS HSRSPINKSE  120
RRHKKKVDGE KTDSSGSFST SDNEDRKKDD TQSSGDEKDR SEAQLKQIAL DLKLKALRED  180
KSKLQATLDK KIDETGILST RVDDLEVQLN KEKQNCERMT SKIKKLIKAH GRYMKAQEDL  240
KRSKGRFERL ADMLASDSLK SGTKEQDSSV NAGNDDPQSA YEMSADDQGQ KHGSKARKRS  300
TALSTSEEEK SGKKRRVIGA DMIHMSGKYR PEDALESFNV NKGTDSPKVL SLKKLREGGN  360
NDEGIVVSSR NDFTDRYNGI EEDPVD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1296315RKRSTALSTSEEEKSGKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g32977.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003563431.20.0zinc finger CCCH domain-containing protein 13
SwissprotQ6H7U21e-102C3H13_ORYSJ; Zinc finger CCCH domain-containing protein 13
TrEMBLA0A0Q3JYX60.0A0A0Q3JYX6_BRADI; Uncharacterized protein
STRINGBRADI1G32977.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38822943
Representative plantOGRP51641215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.11e-31C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]