PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g30000.2.p
Common NameBRADI_1g30000
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 329aa    MW: 36115.1 Da    PI: 4.731
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g30000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.41.9e-11160202754
                       HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
               HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                       ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  Bradi1g30000.2.p 160 MAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 202
                       79*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.269153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-16157218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-12159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-15160215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-9160202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.92E-5160207No hitNo description
CDDcd048732.45E-5258298No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MELDEQAFLE ELFSLRRDAA WECNAMPMGD FFSPGCGAAA MDCFQERHQP TVSVLPTFTA  60
SYDHPHPPPP PQQQPGFDYL SEVYGSSGVV PFSSGGGEYG GDMGFLDVME PKVAAPMAAE  120
VVGACKVEPG LADGGAFSAG PPAPASRKKR VEGMPSKNLM AERRRRKRLN DRLSMLRSVV  180
PKISKMDRTS ILGDTIDYMK ELLERIRQLQ EEMEQEGAPE TAPAPALLSV FRREQNPNEM  240
LARNTPKFEV ERKEKDDTRV EIYCAAKPGL LLSTVSTLDT LGLDIQQCVV SCFNDFAMHA  300
SCSEREMITT EVIKQELYKN AGYGGGCL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147167KKRVEGMPSKNLMAERRRRKR
2161168ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g30000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3563491e-171AK356349.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1033I10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003563265.10.0transcription factor bHLH93
SwissprotQ9LSL12e-71BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A0Q3RUN00.0A0A0Q3RUN0_BRADI; Uncharacterized protein
STRINGBRADI1G30000.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.19e-54beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]