PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g29147.3.p
Common NameBRADI_1g29147, LOC100834666
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 808aa    MW: 91245.3 Da    PI: 7.9314
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g29147.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.63.7e-2280169190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                       +fY++YA+++GFsvr+++++ksk++ge+t+ +f Cs eg+++++++   +  ++++++ rtgC+a+l ++++ ++ ++v+ ++  HnH+l+
  Bradi1g29147.3.p  80 DFYRRYASKAGFSVRRRYTNKSKKTGEVTSCKFACSLEGFNNRTSHIsITPPSSSTSSRRTGCNAHLILRRT-EHGFQVYAFQPRHNHPLF 169
                       6***************************************99988764678888999************999.899*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-1980169IPR004330FAR1 DNA binding domain
PfamPF105512.8E-17282360IPR018289MULE transposase domain
PROSITE profilePS5096610.287546582IPR007527Zinc finger, SWIM-type
SMARTSM005757.5E-6557584IPR006564Zinc finger, PMZ-type
PfamPF044340.0014558578IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 808 aa     Download sequence    Send to blast
MSSPSASASA SGQPDPTPTN LSPKPLPSSS DSASATLQSS PPNPKSLAPP PIPKPNAAAG  60
EEDCTPRMDM EFSSEQHAYD FYRRYASKAG FSVRRRYTNK SKKTGEVTSC KFACSLEGFN  120
NRTSHISITP PSSSTSSRRT GCNAHLILRR TEHGFQVYAF QPRHNHPLFL FPPQPAALLP  180
SPGFSLHSSS FSTQSTDDDA TALPLRTRRQ WEIKYGEAAA LLNYLRRQSL ADPSFHHAVQ  240
LDVEDKVANV FWADARMVID YSHFGDVVAF DVLSRNCISL RHFASFVGCN SFGEPVIFGL  300
ALMYDETCES FQWLFQTFLH AMSGQAPKTF FSHQDTVITK AVSLAMPCTS HAICAWHVKH  360
AATRNVNRLA KGHCDFIKEF KACINNYDEE AEFLASWEAM INKYDLRDNV WLHKLFQEKE  420
KWARPYAKGI FSAGMSTRLN ERLNSDVRDH LRAEVDIVLF LRHLQKVIKD RRYKELEFEY  480
SSRLKLPCLK IRAPMLTQAS EVYTSMIFQL FQEEYEEFQS AYIVNRDEGG PCREYIVSIV  540
EKEKQYTVYG SSMEQTVSCS CRKFETIGFL CSHALKILDT MDIKYIPDRY IMRRWTKYAR  600
CLTSPEVLGQ TVQAERSEEI SNRYQHMCPK YVRLVARASE CEESYRVLDQ FWGELSEKVE  660
EILQKQSIGT SVTQPDVHNL KMSLSSITNG TGSENVLDKS CSTPARIVKK KDKKSKGHPV  720
NYIEKGLRKK QKVHLEQPAV QYAVLNASAQ SENAMFQDLE APPNMSQGTD LSSSMGDINY  780
EETRSGLSPT FTPELDFCGL SQFSGGK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g29147.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024316849.10.0protein FAR1-RELATED SEQUENCE 9 isoform X1
RefseqXP_024316852.10.0protein FAR1-RELATED SEQUENCE 9 isoform X1
TrEMBLA0A0Q3RU520.0A0A0Q3RU52_BRADI; Uncharacterized protein
STRINGBRADI1G29147.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.16e-75FAR1 family protein