PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g26920.1.p | ||||||||
Common Name | BRADI_1g26920, LOC100822177 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB | ||||||||
Protein Properties | Length: 401aa MW: 42344.6 Da PI: 6.4309 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.4 | 3.2e-18 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l+++++ +G ++W++++++ g+ R++k+c++rw +yl Bradi1g26920.1.p 13 RGLWSPEEDEKLLRYITAHGQPCWSSVPKHAGLERCGKSCRLRWINYL 60 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.3 | 5.7e-16 | 66 | 109 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E+ ++d+++ lG++ W+ Ia++++ gRt++++k++w++ Bradi1g26920.1.p 66 RGAFSEQEERTILDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109 89********************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-26 | 4 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.778 | 8 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.06E-27 | 10 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-14 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-15 | 13 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.16E-12 | 16 | 60 | No hit | No description |
PROSITE profile | PS51294 | 25.488 | 61 | 115 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-24 | 64 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-15 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.9E-15 | 66 | 109 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.97E-11 | 68 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MGHHCCSKQK VKRGLWSPEE DEKLLRYITA HGQPCWSSVP KHAGLERCGK SCRLRWINYL 60 RPDLKRGAFS EQEERTILDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLIAQGI 120 DPKTHNLLPA ASKNLLHGAG ANNNNNPASA AGQFQSSSNS NGSTTPFTIS SPTKAAVATV 180 APPAVSMAPA LYDYNNVVPN PGASSGMLMG HEHAAAAMQL QQQGVYPSYA DNGGGVLMNF 240 RDQNNHAASM SMSMSMDFMN ASSNSSSSME LAAGGMTNNP GMEGMAAFLD DEAAAMWATT 300 VEEGMSGPGM LLQQQQGLVQ DEVVVGPPLI GTSNGGGPVG NGNGNGKGAM DMMDVSSAVY 360 GGAAGATTTA FDLELMESCG MFYGGSAGTG MGMEQLQWDY * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-33 | 13 | 115 | 7 | 108 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00350 | DAP | Transfer from AT3G12720 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g26920.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003560182.1 | 0.0 | myb-related protein Hv33 | ||||
TrEMBL | I1GU76 | 0.0 | I1GU76_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G26920.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9751 | 35 | 45 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12720.1 | 5e-82 | myb domain protein 67 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g26920.1.p |
Entrez Gene | 100822177 |