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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g24310.1.p | ||||||||
Common Name | BRADI_1g24310, LOC100829345 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | GRAS | ||||||||
Protein Properties | Length: 466aa MW: 50009.8 Da PI: 5.1465 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 361.1 | 1.6e-110 | 76 | 441 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 +lLl+cAeav+ ++l +a+ lL ++ elasp g++ +R+aayf AL ar+++s + y+ l+ +++ +s ++++a+++++ +sP++kfs Bradi1g24310.1.p 76 LSLLLRCAEAVAMDSLPEARDLLHEIAELASPFGTSPERVAAYFGDALCARVLSSYLGAYSPLALASAQ--QSRRVASAFQAYNALSPLVKFS 166 689***************************************************999999988776665..6999999*************** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa.sRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak. 184 h+taN+aIl+a++ge+rvH++D+di+qGlQWp L++ La sRp++p slRiTg+g+ s e le+tg+rLa+fA +lg+pfef+++ k Bradi1g24310.1.p 167 HFTANKAILQALDGEDRVHVVDLDIMQGLQWPGLFHMLAsSRPSKPLlSLRITGLGA----SLEVLEATGRRLADFAGSLGLPFEFRPIEGKi 255 ***************************************889977667*********....9**************************95554 PP GRAS 185 .rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eakl 275 +++d ++ L ++gEa++V++++ h l+d ++s + ++++++sl+Pk+v++veq++ h +++Fl rf+eal+yysalfd+l + Bradi1g24310.1.p 256 gHVADTDVLLLGRDEGEATVVHWMH--HCLYDVTGSDAG----TVRVLRSLRPKLVTIVEQDLGH-GGDFLGRFVEALHYYSALFDALgDGAG 341 488888999999999*********9..888888888888....**********************.789*******************65555 PP GRAS 276 pres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366 p+e+ ++r+ vEr+llg ei+n+va g +r+ + + +e+W + l++aGF+pv+ls a+qa+lll +++++gy++ ee+g+l lgWkd + Bradi1g24310.1.p 342 PEEEeaQQRHAVERQLLGAEIRNIVAVGGPKRTGEVR-VERWGDELRRAGFRPVSLSGGPAAQARLLLGMCPWKGYTLVEEDGCLKLGWKDLS 433 5555789************************998887.9****************************************************** PP GRAS 367 LvsvSaWr 374 L+++S+W+ Bradi1g24310.1.p 434 LLTASSWE 441 *******5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 56.303 | 49 | 421 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.4E-108 | 76 | 441 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0090610 | Biological Process | bundle sheath cell fate specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 466 aa Download sequence Send to blast |
MIQGVLSRAS AADAAAMKAK RVAPIPEDEE AAMVGARGKR LQLHSSGVQQ QQEAPAEEGK 60 VVVVEAAAET RGLRLLSLLL RCAEAVAMDS LPEARDLLHE IAELASPFGT SPERVAAYFG 120 DALCARVLSS YLGAYSPLAL ASAQQSRRVA SAFQAYNALS PLVKFSHFTA NKAILQALDG 180 EDRVHVVDLD IMQGLQWPGL FHMLASSRPS KPLLSLRITG LGASLEVLEA TGRRLADFAG 240 SLGLPFEFRP IEGKIGHVAD TDVLLLGRDE GEATVVHWMH HCLYDVTGSD AGTVRVLRSL 300 RPKLVTIVEQ DLGHGGDFLG RFVEALHYYS ALFDALGDGA GPEEEEAQQR HAVERQLLGA 360 EIRNIVAVGG PKRTGEVRVE RWGDELRRAG FRPVSLSGGP AAQARLLLGM CPWKGYTLVE 420 EDGCLKLGWK DLSLLTASSW EPTTTDGDEE DDLGAAARQE ECHGS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-150 | 81 | 442 | 25 | 380 | Protein SCARECROW |
5b3h_A | 1e-150 | 81 | 442 | 24 | 379 | Protein SCARECROW |
5b3h_D | 1e-150 | 81 | 442 | 24 | 379 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g24310.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003560068.1 | 0.0 | scarecrow-like protein 23 | ||||
Swissprot | Q9FHZ1 | 1e-161 | SCL23_ARATH; Scarecrow-like protein 23 | ||||
TrEMBL | I1GTB5 | 0.0 | I1GTB5_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G24310.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1371 | 38 | 122 | Representative plant | OGRP2183 | 14 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41920.1 | 1e-145 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g24310.1.p |
Entrez Gene | 100829345 |
Publications ? help Back to Top | |||
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