PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g24270.2.p
Common NameBRADI_1g24270, LOC100838970
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 592aa    MW: 63321.8 Da    PI: 7.9367
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g24270.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH253.3e-08202224426
                       ---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                       ++C++f+r G C+ Gd+C F+Hg
  Bradi1g24270.2.p 202 VPCPNFRRPGGCPSGDNCEFSHG 224
                       79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.206.7E-10175IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.645171IPR020683Ankyrin repeat-containing domain
CDDcd002049.60E-9174No hitNo description
SuperFamilySSF484034.82E-9174IPR020683Ankyrin repeat-containing domain
SMARTSM002485.8E-43163IPR002110Ankyrin repeat
PROSITE profilePS5008812.5833166IPR002110Ankyrin repeat
PfamPF000235.0E-63165IPR002110Ankyrin repeat
PRINTSPR014159.2E-53247IPR002110Ankyrin repeat
PRINTSPR014159.2E-55064IPR002110Ankyrin repeat
SMARTSM003563.6E-4198225IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.126198226IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5199227IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-6201226IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-6202224IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-4231263IPR000571Zinc finger, CCCH-type
SMARTSM0035621234257IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MVAATYGSAR VVSLLLGLSG YVDVARRPGV DGFTALHCAA SGGSSNAVPV VKMLLDAGAD  60
LATPDCAGRF PADVIRAPPA SPDALGDLEM LLGRRRALAV ATSAASGASS PPLSSSPDDE  120
GNRSPSSLSP ITVDRGKKEY PVDPTLPDIK SSVYASDEFR MYAFKVRPCS RAYSHDWTEC  180
PFVHPGENAR RRDPRKHPYT AVPCPNFRRP GGCPSGDNCE FSHGVFESWL HPTQYRTRLC  240
KEGAACARRI CFFAHDEEEL RHVPHNSGAG LLSPRATSSI DMSAAAQLGL LQGSPRHFGP  300
PPGSPSAGSN GGGTAPHWLQ GSRLRSSFNA RDATAEDLGM LLDWESQYLG ALCLPSSSRP  360
QPRLSTGLSV RPTAIAPSTL EDMYASDLAM SPRFTNDQAH SVYSPAHKSA MLNKLHQQKG  420
LLSPVNTNRL YSPRGLDPSA LVHSPIGGMS PRSPRVMEPT SPLSARFGAS HTQREMFEQF  480
ASLNKHQLPS TGSPRNSNSS WGNMGSPMGK VDWGVDGDEL VRLRRPEQSG LAEKEPDVSW  540
GQSPNGRRGE MLGNAGGLAS GSTNRTDWNN QADLLDQTAI GAWLEQHMDQ K*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g24270.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003562905.10.0zinc finger CCCH domain-containing protein 50
RefseqXP_024312449.10.0zinc finger CCCH domain-containing protein 50
SwissprotQ84SL20.0C3H50_ORYSJ; Zinc finger CCCH domain-containing protein 50
TrEMBLI1GTB10.0I1GTB1_BRADI; Uncharacterized protein
STRINGBRADI1G24270.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-128CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]