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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g24051.2.p | ||||||||
Common Name | BRADI_1g24051, LOC100825052 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | YABBY | ||||||||
Protein Properties | Length: 166aa MW: 17790.2 Da PI: 6.5009 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 131.7 | 9.2e-41 | 12 | 161 | 6 | 167 |
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas.qllaaeshldeslkeelleelkveeenlksnvekeesastsvs 97 +e++ yvqC+fC+t l+vsvP + l+k+v+v+CG C+ +lsv++a ++a + e l+el+v+ + +e++ ++ + + Bradi1g24051.2.p 12 LPERLGYVQCKFCTTTLLVSVPCSNLLKMVAVQCGRCAGVLSVSVASPPsSPTPAPPSV-----ELPLQELGVDPPPREWSDESTGDEEGDGE 99 589****************************************9987541566666653.....33456677776666655555555555555 PP YABBY 98 seklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkih 167 e ++n v + ++qr Psayn+fikeei+rika P+i+h+eafs+aaknWah+P+i Bradi1g24051.2.p 100 GEAAESNAAATVN------K--LRKQRTPSAYNCFIKEEIKRIKALEPNITHKEAFSTAAKNWAHLPRIQ 161 5443444444444......3..468*******************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 3.0E-45 | 13 | 162 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 4.06E-6 | 116 | 158 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 3.7E-4 | 117 | 158 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MSSSLVHLEL GLPERLGYVQ CKFCTTTLLV SVPCSNLLKM VAVQCGRCAG VLSVSVASPP 60 SSPTPAPPSV ELPLQELGVD PPPREWSDES TGDEEGDGEG EAAESNAAAT VNKLRKQRTP 120 SAYNCFIKEE IKRIKALEPN ITHKEAFSTA AKNWAHLPRI QHRGN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g24051.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003560056.1 | 9e-89 | protein YABBY 7 | ||||
Swissprot | A2PZN8 | 5e-61 | YAB7_ORYSJ; Protein YABBY 7 | ||||
TrEMBL | A0A2K2DKU1 | 1e-118 | A0A2K2DKU1_BRADI; Uncharacterized protein | ||||
STRING | OB07G25220.1 | 3e-60 | (Oryza brachyantha) | ||||
STRING | LPERR07G16630.1 | 3e-60 | (Leersia perrieri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23420.1 | 5e-28 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g24051.2.p |
Entrez Gene | 100825052 |