PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

HD-ZIP

Protein Properties

Length: 234aa MW: 25893.2 Da PI: 7.3635

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi1g23460.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.6	5.2e-19	56	109	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++eq+e Le F+++r++ + ++ +LA++lgL+ +qV vWFqNrRa++k Bradi1g23460.1.p 56 KKRRLSDEQVEMLELSFREERKLETGRKVHLAAELGLDPKQVAVWFQNRRARHK 109 45589***********************************************99 PP
2	HD-ZIP_I/II	116.9	1.2e-37	56	145	2	91
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 kkrrls+eqv++LE sF+ee+kLe+ rKv+la eLgl+p+qvavWFqnrRAR+k+k lE+++++Lk+a+da ++++Le+ev +L+e+l Bradi1g23460.1.p 56 KKRRLSDEQVEMLELSFREERKLETGRKVHLAAELGLDPKQVAVWFQNRRARHKSKLLEEEFAKLKHAHDAAILHKCHLENEVLRLKERL 145 9**************************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	4.9E-17	54	115	IPR001356	Homeobox domain
Pfam	PF00046	2.7E-16	56	109	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.37E-16	56	110	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.001	56	111	IPR001356	Homeobox domain
CDD	cd00086	1.87E-16	56	111	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.7E-18	56	109	IPR009057	Homeodomain-like
PRINTS	PR00031	1.2E-5	82	91	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	86	109	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.2E-5	91	107	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009733	Biological Process	response to auxin
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MDKQELFASS YMGTSFLGAN GTAAVQGERP RARRRRRRAA AARCEDVDGG LLLDPKKRRL 60 SDEQVEMLEL SFREERKLET GRKVHLAAEL GLDPKQVAVW FQNRRARHKS KLLEEEFAKL 120 KHAHDAAILH KCHLENEVLR LKERLGVIEE EVTRLRSAGS CHATSGDGAG HHGSPSSSFS 180 TGTCHHQQQP GFTGGADVML GNDDLMMYVP DAEYGGAYAD TSVAEWFSLY GLM*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	28	37	RPRARRRRRR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00473	DAP	Transfer from AT4G36740	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi1g23460.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK121889	1e-136	AK121889.1 Oryza sativa Japonica Group cDNA clone:J033105B17, full insert sequence.
GenBank	AY559047	1e-136	AY559047.1 Oryza sativa (japonica cultivar-group) homeodomain leucine zipper protein 14 (hox14) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003562820.1	1e-173	homeobox-leucine zipper protein HOX14
Swissprot	Q7XI85	5e-84	HOX14_ORYSJ; Homeobox-leucine zipper protein HOX14
TrEMBL	I1GT02	1e-171	I1GT02_BRADI; Uncharacterized protein
STRING	BRADI1G23460.1	1e-172	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2006	38	101
Representative plant	OGRP3776	10	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	1e-39	homeobox protein 40

Link Out ? help Back to Top
Phytozome	Bradi1g23460.1.p
Entrez Gene	100839491

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]