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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g22920.1.p | ||||||||
Common Name | BRADI_1g22920, LOC100829268 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | LBD | ||||||||
Protein Properties | Length: 238aa MW: 24322.7 Da PI: 7.9889 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 98 | 9.3e-31 | 12 | 113 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C++C+vlr++C++ Cvl+p++ +++q +++ +v+k+FG++ +l++l+a+pe +r+++++sl+yeA r+ +Pv+Gavg+++++++ql+ Bradi1g22920.1.p 12 SCNGCRVLRKGCNEACVLRPCLhwieaAESQGHATVFVAKFFGRAGLLSFLTAVPEPQRPAVFQSLLYEAAGRTINPVSGAVGLLWSGSWQLC 104 6*********************9999777889************************************************************* PP DUF260 89 qlkaelall 97 +++++++l+ Bradi1g22920.1.p 105 EAAVQTVLR 113 **9998776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.796 | 11 | 117 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.3E-26 | 12 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MRGIEWAAAG MSCNGCRVLR KGCNEACVLR PCLHWIEAAE SQGHATVFVA KFFGRAGLLS 60 FLTAVPEPQR PAVFQSLLYE AAGRTINPVS GAVGLLWSGS WQLCEAAVQT VLRGGAIGPL 120 PDLAGGVPEG GVGGSDLFVS SARRATAVGC STFSTAKRVN TTTTRRPGMP LQAAPAHQQL 180 QDPSCDLGLW LSGPGSPSVA AAGKRAGTPS MSSDDDSVTT SGGAGGGREP ELLNLFV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g22920.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003562786.1 | 1e-170 | LOB domain-containing protein 37 | ||||
Swissprot | Q9SZE8 | 7e-67 | LBD39_ARATH; LOB domain-containing protein 39 | ||||
TrEMBL | I1GSU5 | 1e-169 | I1GSU5_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G22920.1 | 1e-170 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4084 | 36 | 75 | Representative plant | OGRP403 | 16 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37540.1 | 6e-65 | LOB domain-containing protein 39 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g22920.1.p |
Entrez Gene | 100829268 |