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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g19900.1.p | ||||||||
Common Name | BRADI_1g19900, LOC100843513 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | HSF | ||||||||
Protein Properties | Length: 314aa MW: 34737 Da PI: 7.1932 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 111.9 | 4.4e-35 | 36 | 128 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 Fl+k+ye+++d+ +++++sw e++ +fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+ ++ weF+++ F+kg k+ll Bradi1g19900.1.p 36 FLSKTYELVDDPCTDHIVSWGEDEATFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADR---------WEFANEFFRKGAKHLL 119 9****************************************************************999.........**************** PP XXXXXXXXX CS HSF_DNA-bind 95 ekikrkkse 103 +i+r+ks+ Bradi1g19900.1.p 120 AEIHRRKSS 128 ******997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 4.1E-56 | 32 | 125 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 5.7E-37 | 33 | 125 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 7.07E-33 | 33 | 125 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 8.9E-31 | 36 | 125 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.1E-19 | 36 | 59 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.1E-19 | 74 | 86 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 75 | 99 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.1E-19 | 87 | 99 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008356 | Biological Process | asymmetric cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MAFLVERCGE MVVSMESSAH GGGGGVGGGK AVPAPFLSKT YELVDDPCTD HIVSWGEDEA 60 TFVVWRPPEF ARDLLPNYFK HNNFSSFVRQ LNTYGFRKIV ADRWEFANEF FRKGAKHLLA 120 EIHRRKSSQP PPPLPHHHHA YHHLHHHHHH LGTAFSPPPP LAAHHHHPMS SYHFQEDPPA 180 PAIGSNNNGG QGSGGEFLAA LSEDNRELRR RNSVLLSELA HMKKLYNDII YFLQNHVAPV 240 SLPTPQTPSN LISGIVHGGA GAAANTNSSC RLMELDEEGE DETASVKLFG VALKRTKRAR 300 RPEERFCDLG SEA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 1e-21 | 23 | 125 | 17 | 129 | Heat shock factor protein 1 |
5d5v_B | 1e-21 | 23 | 125 | 17 | 129 | Heat shock factor protein 1 |
5d5v_D | 1e-21 | 23 | 125 | 17 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00187 | DAP | Transfer from AT1G46264 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g19900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK063952 | 1e-124 | AK063952.1 Oryza sativa Japonica Group cDNA clone:001-123-F07, full insert sequence. | |||
GenBank | AY344494 | 1e-124 | AY344494.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF12 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003559898.1 | 0.0 | heat stress transcription factor B-4b | ||||
Swissprot | Q7XHZ0 | 1e-109 | HFB4B_ORYSJ; Heat stress transcription factor B-4b | ||||
TrEMBL | I1GRU9 | 0.0 | I1GRU9_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G19900.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP121 | 37 | 394 | Representative plant | OGRP96 | 17 | 233 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46264.1 | 7e-84 | heat shock transcription factor B4 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g19900.1.p |
Entrez Gene | 100843513 |
Publications ? help Back to Top | |||
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