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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g18400.1.p | ||||||||
Common Name | BRADI_1g18400, LOC100843821 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bHLH | ||||||||
Protein Properties | Length: 238aa MW: 25535.9 Da PI: 7.328 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.9 | 1.5e-12 | 2 | 49 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h ++Er+RR+++N+ + +Lr+l P + + k+ + a+i Av++I++L Bradi1g18400.1.p 2 SHIAVERNRRRQMNEHLKTLRSLTPAL---YVKRGDQASIIGGAVDFIREL 49 89*************************...9******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.47E-11 | 1 | 54 | No hit | No description |
SuperFamily | SSF47459 | 5.83E-15 | 1 | 71 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.939 | 1 | 49 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-11 | 2 | 50 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.2E-10 | 2 | 49 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.9E-10 | 4 | 55 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009913 | Biological Process | epidermal cell differentiation | ||||
GO:0010374 | Biological Process | stomatal complex development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MSHIAVERNR RRQMNEHLKT LRSLTPALYV KRGDQASIIG GAVDFIRELH VLLEALQANK 60 RRRLNNNLHP CSTPTTPSPR SLPTNNTNSS SPGSGGSSSA ASNTGSGGGV NKEKARELAA 120 CCSSAAAEVE ARISGANLLL RTLSGRAPPG QAAKMVGLLQ ALHLEVLHLN ISTLEDTVLH 180 SFVLQIGLEC QLSVEDLAFE VHQTFCCDYQ QEDHHGQQQL LLELPIAGTV HGDIMIN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 59 | 63 | KRRRL |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g18400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014752251.1 | 1e-174 | transcription factor MUTE | ||||
TrEMBL | I1GRC8 | 1e-173 | I1GRC8_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G18400.1 | 1e-173 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11144 | 34 | 41 | Representative plant | OGRP253 | 15 | 131 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06120.1 | 3e-29 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g18400.1.p |
Entrez Gene | 100843821 |
Publications ? help Back to Top | |||
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