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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g16120.5.p | ||||||||
Common Name | BRADI_1g16120 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | WRKY | ||||||||
Protein Properties | Length: 459aa MW: 49292.3 Da PI: 7.6145 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.6 | 1.6e-30 | 206 | 262 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgynWrKYGqK vkg e+prsYY+Ct+agCpvkkkversa +++++i+Y+g+Hnh+ Bradi1g16120.5.p 206 DDGYNWRKYGQKAVKGGEYPRSYYKCTQAGCPVKKKVERSA-CGEITQIIYRGQHNHQ 262 8****************************************.9**************8 PP | |||||||
2 | WRKY | 88 | 7.8e-28 | 374 | 427 | 1 | 54 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYeg 54 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC vkk++er+++d + v++tYe Bradi1g16120.5.p 374 LDDGYRWRKYGQKVVKGNPHPRSYYKCTFQGCDVKKHIERCSQDSTDVITTYEA 427 59**************************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 8.0E-28 | 197 | 264 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.62E-24 | 203 | 264 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.2E-32 | 205 | 263 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-23 | 206 | 262 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 24.306 | 206 | 264 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 7.9E-31 | 361 | 427 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-24 | 366 | 427 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.964 | 369 | 427 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.4E-28 | 374 | 433 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.0E-20 | 375 | 426 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 459 aa Download sequence Send to blast |
MAAHEASASG GEGARRPPPR PALSLPPRAA AESFFAAAGS AAESSPGPLT LAAALFPDMP 60 SPAFHGSFTQ LLVGAMGSPA ASSASGPSPP SPFPVPPGLS RTALLGSPSL FSPTGNFEMS 120 HRQALAQVTA QAVHSQYTIV NQADYPLPFS STTSAFTSQH VNSSANITST EETPTPPSLT 180 GNSNFKPNEV SQGFQTSALT VDKPADDGYN WRKYGQKAVK GGEYPRSYYK CTQAGCPVKK 240 KVERSACGEI TQIIYRGQHN HQRPPKRRSK DGGSLLDEVD DFHENGDTLN RSEQGSQDHS 300 AKFEVSNDGI TVPSMSKRAE GDDQSSGSSD SEEKACDEAG ADNGDGGSTN AKKRHVPAPA 360 QRIIVQTTSE VDLLDDGYRW RKYGQKVVKG NPHPRSYYKC TFQGCDVKKH IERCSQDSTD 420 VITTYEAYGT ERRIRHQVAN HRCADQHYVQ LRQILLYS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-28 | 191 | 427 | 5 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 1e-28 | 191 | 427 | 5 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 262 | 267 | RPPKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g16120.5.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003559732.1 | 0.0 | probable WRKY transcription factor 4 | ||||
Refseq | XP_010233399.1 | 0.0 | probable WRKY transcription factor 4 | ||||
Refseq | XP_024313340.1 | 0.0 | probable WRKY transcription factor 4 | ||||
Swissprot | Q9XI90 | 1e-100 | WRKY4_ARATH; Probable WRKY transcription factor 4 | ||||
TrEMBL | A0A0Q3GVH1 | 0.0 | A0A0Q3GVH1_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G16120.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13960.1 | 2e-80 | WRKY DNA-binding protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g16120.5.p |
Publications ? help Back to Top | |||
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