![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bradi1g14677.10.p | ||||||||
Common Name | BRADI_1g14677, LOC100840164 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 281aa MW: 30572.4 Da PI: 7.3199 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 135 | 2.9e-42 | 7 | 106 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +CaaCk+lrrkC+++Cv+apyfp +qp++fanvhk+FGasnv+kll++lp+ +reda++sl+yeAear+rdPvyG+v+ i+ lq++++ +++ Bradi1g14677.10.p 7 PCAACKLLRRKCTQGCVFAPYFPPDQPARFANVHKVFGASNVSKLLNDLPQAQREDAVNSLAYEAEARLRDPVYGCVAYISILQHRIKMVRE 98 7******************************************************************************************* PP DUF260 93 elallkee 100 e++++++e Bradi1g14677.10.p 99 EIVSTRKE 106 **999887 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.681 | 6 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.0E-42 | 7 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009954 | Biological Process | proximal/distal pattern formation | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0048441 | Biological Process | petal development |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 281 aa Download sequence Send to blast |
MSSSSSPCAA CKLLRRKCTQ GCVFAPYFPP DQPARFANVH KVFGASNVSK LLNDLPQAQR 60 EDAVNSLAYE AEARLRDPVY GCVAYISILQ HRIKMVREEI VSTRKELAGY VGQAAYAPFL 120 PAQQPHHAAQ FVPGMGLLQH PQQHQQQLMA AMHQQQQQQQ QQQGPYHHQQ IVDAQHMAAA 180 VEVAARGNQD MIMHHGFMPA AGGPTVAVVA PEAAAYEGGA QPFLIQQQQQ QPHPSAMTSY 240 RMEPSPPPQS SGHSHVDMPH HRQQHTDGSD DGSGGPPPPT * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-47 | 4 | 110 | 8 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-47 | 4 | 110 | 8 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bradi1g14677.10.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC136972 | 1e-124 | AC136972.3 Oryza sativa chromosome 3 BAC OSJNBb0007E22 genomic sequence, complete sequence. | |||
GenBank | AP014959 | 1e-124 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012611 | 1e-124 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010232652.1 | 0.0 | LOB domain-containing protein 36 | ||||
TrEMBL | I1GQB0 | 0.0 | I1GQB0_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G14677.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6143 | 34 | 56 | Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G66870.1 | 2e-60 | ASYMMETRIC LEAVES 2-like 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bradi1g14677.10.p |
Entrez Gene | 100840164 |