PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g14600.1.p
Common NameBRADI_1g14600, LOC100838948
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 308aa    MW: 33257.6 Da    PI: 4.4853
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g14600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.81.3e-102342741055
                       HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Bradi1g14600.1.p 234 RKRRERINERLKVLQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 274
                       9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.154224273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-14224290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-13227286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.1E-12230279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.00E-12233278No hitNo description
PfamPF000105.4E-8234274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
METGGVIAEA GWGSLDISSQ AEESEMMEQL LGTFPGEENQ QELPWSVPSS NAAYNYVHCY  60
GSSNAYSSTS SNSVGSLILD LPSEYGSFYV SDSNGIGSAL DLNTVQEQGA AQFMDTILNP  120
SYGNGDSSCE DLGDSSMNLL DSIGTSNKRN CQEQGKIADQ TRGRKCSRKA EPKRAKKVTH  180
HEGEDGTIAA TKGQSMSCCT SENDSNGSQE SPVAANPSGK GRQSTTDPQS LYARKRRERI  240
NERLKVLQNL VPNGTKVDIS TMLEEAVQYV KFLQLQIKLL SSDDMWMYAP IAYNGMNIGV  300
DLNLSHN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g14600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559675.10.0transcription factor bHLH84
TrEMBLI1GQA20.0I1GQA2_BRADI; Uncharacterized protein
STRINGBRADI1G14600.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43103270
Representative plantOGRP10481454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.12e-50bHLH family protein