PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g14500.3.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 580aa    MW: 66821.1 Da    PI: 8.046
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g14500.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.85.3e-15341131297
                       HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                        ++ +++p +f+++ +g+ ++  +++le+++g s++v +  +k+++++v+ +GW +Fv+  +L+ g++++F+++g+s+f   v +f
  Bradi1g14500.3.p  34 FQHEMIVPEEFVQRLKGEIRG--EIKLETRNGYSYTVGV--SKNQEKVVFMAGWGQFVENFDLQMGESIIFRYNGSSQF--SVVMF 113
                       56789*******999877444..8***************..*********************************99999..66655 PP
2B345.31.5e-141842651299
                       HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                        ++ +++p +f+++ +g+ ++  +++le+++g s+++ +  +k +++ v+ +GW +Fv+  +L+ g++++F+++g+s+f   v++f+k
  Bradi1g14500.3.p 184 FQHEMIVPQEFVQRLKGEIRG--EIKLETRNGYSYTIGV--SKDQEELVFMAGWGKFVENFDLQMGESIIFRYNGSSQF--SVTIFDK 265
                       46779*******999877444..8***************..*********************************99999..9999986 PP
3B340.16.7e-13477573199
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-....TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvlt....kGWkeFvkangLkegDfvvFkldgrse 89 
                       f+ v+++ +v +  rl++p+ + +++ g++ +s   +  ++ g+ W v+l  r++s + ++     +GW++Fv++n++k gD+++F++ ++++
  Bradi1g14500.3.p 477 FVAVMSRVNVVSGFRLTVPNWYGQKYLGDE-QS---VWLQRLGENWPVNL--RGRSPGLLIDrrfeNGWQKFVEENDIKIGDICLFERLNNQR 563
                       778899999*****************6664.43...445679********..99999966555555*********************988888 PP

                       E..EEEEE-S CS
                B3  90 felvvkvfrk 99 
                        +l+v+++++
  Bradi1g14500.3.p 564 CTLKVHIISA 573
                       8899999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.33E-1820115IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.1E-1820115IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.94223116IPR003340B3 DNA binding domain
SMARTSM010192.1E-726119IPR003340B3 DNA binding domain
CDDcd100171.41E-1334114No hitNo description
PfamPF023621.0E-1235114IPR003340B3 DNA binding domain
SuperFamilySSF1019365.49E-19170265IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-18170265IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.914173266IPR003340B3 DNA binding domain
CDDcd100179.14E-13174264No hitNo description
SMARTSM010193.3E-7176266IPR003340B3 DNA binding domain
PfamPF023623.2E-12185265IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.4E-16471573IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-15472573IPR015300DNA-binding pseudobarrel domain
CDDcd100171.17E-16475572No hitNo description
PROSITE profilePS5086311.096477574IPR003340B3 DNA binding domain
SMARTSM010199.4E-7477574IPR003340B3 DNA binding domain
PfamPF023621.7E-12477573IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MGAPCERCKW HDEQDYRDLD DREKHFLMFL MGDFQHEMIV PEEFVQRLKG EIRGEIKLET  60
RNGYSYTVGV SKNQEKVVFM AGWGQFVENF DLQMGESIIF RYNGSSQFSV VMFDKLGREK  120
ALSVIADALP PRIQERHTDA TETVHNKGKN MGAPCGRCKW RDELDYRGLD DREKHFLMFM  180
MGDFQHEMIV PQEFVQRLKG EIRGEIKLET RNGYSYTIGV SKDQEELVFM AGWGKFVENF  240
DLQMGESIIF RYNGSSQFSV TIFDKLGREK ALSVIEDALP PHVLERHTDA TENVSRSHGY  300
PQAMQMQLPN DAMNRFCVHC QPMQMQPHAE TMDRSHGRHK TKKMQSLTET VTQSQVHPQP  360
MQMQPSSKTV NRSPMQMPPM KRQRRLQRNK SNQGNKTALK SSSSESSGTG DSFSSEEGHA  420
AVPCYNYAVE KKDKMHRVQK EQLKDGYIAT RVTKLTPIQA EQVKKEVQCL HSDIPIFVAV  480
MSRVNVVSGF RLTVPNWYGQ KYLGDEQSVW LQRLGENWPV NLRGRSPGLL IDRRFENGWQ  540
KFVEENDIKI GDICLFERLN NQRCTLKVHI ISAKDGSCC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1336344GRHKTKKMQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g14500.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014750916.10.0putative B3 domain-containing protein Os08g0325100
TrEMBLA0A0Q3J8H00.0A0A0Q3J8H0_BRADI; Uncharacterized protein
STRINGBRADI1G14500.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124821536
Representative plantOGRP1394224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-14B3 family protein