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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g14300.4.p | ||||||||
Common Name | BRADI_1g14300, LOC100844646 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | WRKY | ||||||||
Protein Properties | Length: 346aa MW: 37570.3 Da PI: 10.4877 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100.2 | 1.3e-31 | 276 | 333 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +dp+++++tYegeHnh+ Bradi1g14300.4.p 276 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPSMLIVTYEGEHNHT 333 9*************************988****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 1.2E-18 | 226 | 272 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 4.0E-34 | 262 | 333 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.297 | 269 | 335 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.75E-27 | 272 | 333 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.6E-38 | 274 | 334 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.5E-27 | 276 | 332 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MEEVEEANRV AVESCHRVLA LLSQSQDPAQ LRSIAQGTDE ACARFRKVAK LLSNEGGGSP 60 AAGGTHPRAK VVSRRQTPGF LSQKGFLDGN TPVVVLNSAH PSTSSAQVYP RNKTLDSQST 120 HQIGGPPKLV QPLSAHFQFG NVSRYQFQHQ HQQQKMQAEM FKRSNSGINL KFDSPSGTGT 180 MSSARSFMSS LSMDGSVASL DAKSSSFHLI GGPAMSDPVN AQQAPRRRCS GRGEDGNGKC 240 TATGRCHCSK RSRKLRVKRT IKVPAISNKI ADIPPDEYSW RKYGQKPIKG SPHPRGYYKC 300 SSVRGCPARK HVERCVDDPS MLIVTYEGEH NHTRMPTQSA QSAQA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-20 | 270 | 336 | 10 | 75 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g14300.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010232453.1 | 0.0 | protein WRKY1 isoform X1 | ||||
Swissprot | Q93WU6 | 3e-91 | WRK74_ARATH; Probable WRKY transcription factor 74 | ||||
TrEMBL | I1GQ69 | 0.0 | I1GQ69_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G14300.2 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2859 | 38 | 87 | Representative plant | OGRP1817 | 15 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28650.1 | 7e-74 | WRKY DNA-binding protein 74 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g14300.4.p |
Entrez Gene | 100844646 |
Publications ? help Back to Top | |||
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