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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g13980.2.p | ||||||||
Common Name | BRADI_1g13980 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bHLH | ||||||||
Protein Properties | Length: 457aa MW: 48804.7 Da PI: 7.3331 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 52.7 | 7.4e-17 | 281 | 327 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+k Lq Bradi1g13980.2.p 281 VHNLSERRRRDRINEKMKALQELIPHC-----NKTDKASMLDEAIEYLKTLQ 327 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.88E-21 | 275 | 344 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.266 | 277 | 326 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.42E-17 | 280 | 331 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 5.2E-22 | 281 | 335 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.3E-14 | 281 | 327 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.7E-18 | 283 | 332 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006783 | Biological Process | heme biosynthetic process | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0009959 | Biological Process | negative gravitropism | ||||
GO:0010100 | Biological Process | negative regulation of photomorphogenesis | ||||
GO:0010161 | Biological Process | red light signaling pathway | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0015995 | Biological Process | chlorophyll biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 457 aa Download sequence Send to blast |
MGDASRPLGF VLDRLIDQRL VDDDLMELLW CNGHVVMQSQ THRKLPPRPE KAAAAAAVMQ 60 EDEAGLWFPF SHADSLDKDI FSDLFCEAVP QAVGIKPDCY GDGNGSKSSD APSELMPPPK 120 STMADGGELS DLVQARSTGK AAAAAMEQEG ASASSFCGSS NQVQVQHAGR VQSAGTAAYG 180 SSARLQSAVG SGINANGRGR EATVASSSGR SNGCFTNTTT TSTEPTSASL RSSSKRKRLD 240 SRTEDYSESP SEDAESESLA LIERKPPLKL PTARRSRAAE VHNLSERRRR DRINEKMKAL 300 QELIPHCNKT DKASMLDEAI EYLKTLQMQV QMMWMGSGMA PPAVMFPGMH QYLPRRMPSF 360 MAPPPAAAAA AQSLPDHYAH FLGVNHHLQP PSHHHQHYAA QGMGYYPLGA KAVQQSPALP 420 IHHVHSTANG ATPAPAAAAA ATNSNTPGNG MHPNRI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 285 | 290 | ERRRRD |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00074 | ChIP-chip | Transfer from AT2G20180 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g13980.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KX085422 | 1e-116 | KX085422.1 Triticum aestivum stress-responsive bHLH transcription factor (bHLH39) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003559649.1 | 0.0 | transcription factor PIF1 | ||||
Refseq | XP_014752368.1 | 0.0 | transcription factor PIF1 | ||||
Refseq | XP_014752369.1 | 0.0 | transcription factor PIF1 | ||||
Refseq | XP_014752371.1 | 0.0 | transcription factor PIF1 | ||||
Refseq | XP_024318757.1 | 0.0 | transcription factor PIF1 | ||||
Refseq | XP_024318764.1 | 0.0 | transcription factor PIF1 | ||||
Refseq | XP_024318772.1 | 0.0 | transcription factor PIF1 | ||||
Refseq | XP_024318776.1 | 0.0 | transcription factor PIF1 | ||||
Refseq | XP_024318781.1 | 0.0 | transcription factor PIF1 | ||||
Refseq | XP_024318785.1 | 0.0 | transcription factor PIF1 | ||||
Refseq | XP_024318787.1 | 0.0 | transcription factor PIF1 | ||||
Refseq | XP_024318789.1 | 0.0 | transcription factor PIF1 | ||||
Refseq | XP_024318793.1 | 0.0 | transcription factor PIF1 | ||||
TrEMBL | A0A0Q3KSJ6 | 0.0 | A0A0Q3KSJ6_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G13980.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3107 | 36 | 77 | Representative plant | OGRP258 | 16 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 7e-35 | phytochrome interacting factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g13980.2.p |