PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g13910.1.p
Common NameBRADI_1g13910, LOC100834680
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HD-ZIP
Protein Properties Length: 862aa    MW: 93546.4 Da    PI: 6.4659
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g13910.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.74.1e-183693457
                      -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                        ++t+eq+++Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Bradi1g13910.1.p 36 YVRYTPEQVDALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 93
                      6789****************************************************97 PP
2START174.85.4e-551843912204
                       HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEE CS
             START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galq 92 
                       +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++ +++l+ i +g  g+++
  Bradi1g13910.1.p 184 IAEETLAEFLSKATGTAVDWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCVDVLQIIPTGngGTIE 275
                       68999*****************************************************.8888888888************************ PP

                       EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHH CS
             START  93 lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwll 181
                       l++++++a+++l++ Rdf+++Ry+  l++g++vi+++S+++ +  p+   ++++vRae+lpSg+li+p+++g+s +++v+hvdl++++++++l
  Bradi1g13910.1.p 276 LIYMQTYAPTTLAApRDFWILRYTSGLEDGSLVICERSLTQATGGPSgpnTPNFVRAEVLPSGYLIRPCEGGGSMIHIVDHVDLDAWSVPEVL 368
                       ************999*****************************999999******************************************* PP

                       HHHHHHHHHHHHHHHHHHTXXXX CS
             START 182 rslvksglaegaktwvatlqrqc 204
                       r+l++s  + ++k++ a+l++ +
  Bradi1g13910.1.p 369 RPLYESPKILAQKMTIAALRHIR 391
                       ******************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.3213094IPR001356Homeobox domain
SMARTSM003892.6E-153298IPR001356Homeobox domain
SuperFamilySSF466891.07E-163497IPR009057Homeodomain-like
CDDcd000864.21E-163595No hitNo description
PfamPF000461.1E-153693IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.1E-183793IPR009057Homeodomain-like
CDDcd146862.43E-687126No hitNo description
PROSITE profilePS5084827.299174374IPR002913START domain
CDDcd088751.11E-68178394No hitNo description
Gene3DG3DSA:3.30.530.206.6E-24182374IPR023393START-like domain
SMARTSM002343.1E-48183393IPR002913START domain
PfamPF018528.5E-53184391IPR002913START domain
SuperFamilySSF559616.73E-39184394No hitNo description
PfamPF086701.3E-51718860IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 862 aa     Download sequence    Send to blast
MAGAMVAGLH GGGRDRDRDR SSPGGGGAPQ VDTGKYVRYT PEQVDALERV YSECPKPSSL  60
RRQQLIRECP ILSNIEPKQI KVWFQNRRCR EKQRKEASRL QTVNRKLSAM NKLLMEENDR  120
LQKQVSRLVY ENGYMRTHLS NPSVATTDTS CESVVTSGQH QQQQNPAVPR PQRDANNPAG  180
LLAIAEETLA EFLSKATGTA VDWVQMVGMK PGPDSIGIIA VSHNCSGVAA RACGLVSLEP  240
TKVAEILKDR PSWYRDCRCV DVLQIIPTGN GGTIELIYMQ TYAPTTLAAP RDFWILRYTS  300
GLEDGSLVIC ERSLTQATGG PSGPNTPNFV RAEVLPSGYL IRPCEGGGSM IHIVDHVDLD  360
AWSVPEVLRP LYESPKILAQ KMTIAALRHI RQIAHESSGE MPYGGGRQPA VLRTFSQRLS  420
RGFNDAVNGF LDDGWSLMSS DGAEDVTIAI NSSPNKLVGS HVNSSQLFSA IGGGILCAKA  480
SMLLQNVPPA LLVRFLREHR SEWADPGVDA YSAAALRASP YAVPGLRASG FMGSQVILPL  540
AHTLEHEEFL EVIRLEGHSL CHDEVVLSRD MYLLQLCSGV DENAAGACAQ LVFAPIDESF  600
ADDAPLLPSG FRVIPLDAKT DAPSATRTLD LASTLEVGSG GTRAASDAPS TSNTRSVLTI  660
AFQFSYENHL RESVASMARQ YVRTVVASVQ RVAMAIAPSR LGGQIEMKNP PGSPEAHTLA  720
RWIGKSYRFH TGAELLCTDS QSADASLKAL WQHSDSIMCC SLKAAPVFTF ANQAGLDMLE  780
TTLIALQDIS LEKILDDDGR KALCSEFPKI MQQGFAYLPG GVCVSSMGRP VSYEQAVAWK  840
VLSEDDTPHC LAFMFVNWSF V*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g13910.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3642150.0AK364215.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2022L20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003562005.10.0homeobox-leucine zipper protein HOX32
SwissprotA2XK300.0HOX32_ORYSI; Homeobox-leucine zipper protein HOX32
TrEMBLI1GQ250.0I1GQ25_BRADI; Uncharacterized protein
STRINGBRADI1G13910.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Representative plantOGRP6511671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein