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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g13425.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | G2-like | ||||||||
Protein Properties | Length: 204aa MW: 22538.3 Da PI: 4.2755 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 67.2 | 2.8e-21 | 34 | 88 | 4 | 55 |
G2-like 4 lrWtpeLHerFveaveqLGGsekAtP...ktilelmkvkgLtlehvkSHLQkYRl 55 lrWt +LH+ Fveav+ GG+ +A P k+ +e+m+v gLt ++kSHLQkYR Bradi1g13425.1.p 34 LRWTDDLHKIFVEAVAYQGGPYEAKPtavKQTMEAMGVTGLTTWNIKSHLQKYRE 88 89************************44445567789*****************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.22E-11 | 28 | 88 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.6E-19 | 31 | 87 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.3E-16 | 34 | 88 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MSNDKPAQNN EALYMSSILA CRILRAMQPT RSFLRWTDDL HKIFVEAVAY QGGPYEAKPT 60 AVKQTMEAMG VTGLTTWNIK SHLQKYREGC DLGAKSPRDV LDTASPSEAS HDPTSETEVA 120 MNNDEAMTGM QMVNNLLMGD MEMAETDFSA DEVQMMENEL MNEIQLIKHG SQCSQIPIDE 180 YVYDLAKYPF DKDSAGSASS SSL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g13425.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010231922.1 | 1e-152 | protein PHR1-LIKE 2-like isoform X1 | ||||
Refseq | XP_010231927.1 | 1e-152 | protein PHR1-LIKE 2-like isoform X1 | ||||
Refseq | XP_024310546.1 | 1e-153 | protein PHR1-LIKE 2-like isoform X2 | ||||
TrEMBL | I1GPW8 | 1e-151 | I1GPW8_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G13422.1 | 1e-152 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15499 | 12 | 16 | Representative plant | OGRP17682 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24120.1 | 2e-16 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g13425.1.p |