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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g12677.1.p | ||||||||
Common Name | BRADI_1g12677, LOC100833323 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | HB-other | ||||||||
Protein Properties | Length: 252aa MW: 28353.9 Da PI: 7.1288 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 30 | 8.8e-10 | 177 | 211 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 +++yps+ e++ LA+++gL+ +q+ +WF N+R ++ Bradi1g12677.1.p 177 RSPYPSELEKAALAESTGLDRKQINNWFINQRKRH 211 589*****************************885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 8.2E-21 | 4 | 48 | IPR005540 | KNOX1 |
Pfam | PF03790 | 4.3E-21 | 5 | 44 | IPR005540 | KNOX1 |
SMART | SM01256 | 1.0E-24 | 52 | 103 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.0E-18 | 58 | 99 | IPR005541 | KNOX2 |
SMART | SM01188 | 2.9E-4 | 131 | 152 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 13.378 | 151 | 214 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.3E-11 | 153 | 218 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.31E-17 | 153 | 221 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-22 | 157 | 214 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 6.36E-12 | 165 | 214 | No hit | No description |
Pfam | PF05920 | 2.7E-15 | 171 | 210 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 189 | 212 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MGTDAMKAKI MSHPLYPALL RAFIDCQKVG APPEVVGRLS SLADDLKSNS DDVLEQPADP 60 ELDQFMETYC VMLVRYSQEL TRQIQEADHF FRNMEAHIST SALGDNCEGE ASTEDEQEIG 120 DVGGLPVQAA ELKDQFLNKH NGYLSSLWRK LSKKKTKGKL PSGARQKLQQ WWRLNWRSPY 180 PSELEKAALA ESTGLDRKQI NNWFINQRKR HWKPTPPAVE YRSQQQTLYG ASSSSSAAFL 240 TEGHYFTRGS A* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g12677.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014755813.1 | 1e-174 | homeobox protein knotted-1-like 4 | ||||
Swissprot | Q75LX7 | 1e-106 | KNOS4_ORYSJ; Homeobox protein knotted-1-like 4 | ||||
TrEMBL | I1GPN4 | 0.0 | I1GPN4_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G12677.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4746 | 29 | 50 | Representative plant | OGRP167 | 17 | 148 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08150.1 | 3e-66 | KNOTTED-like from Arabidopsis thaliana |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g12677.1.p |
Entrez Gene | 100833323 |