PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g12510.4.p | ||||||||
Common Name | BRADI_1g12510, LOC100829358 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | TALE | ||||||||
Protein Properties | Length: 636aa MW: 70449.1 Da PI: 5.9642 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.1 | 7.3e-09 | 402 | 439 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +e+ LA+++gLt +q+++WF N R + Bradi1g12510.4.p 402 FEHflDPYPKDSEKLMLARQTGLTRSQISNWFINARVR 439 6644589*****************************88 PP | |||||||
2 | BELL | 123 | 1.2e-39 | 265 | 336 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e+qelq+k akLl +l+eVd++Yk+y++q+q+v+ssF++vag g+akpYt++Al++iSrhFrcLkdai++q+ Bradi1g12510.4.p 265 EKQELQNKMAKLLAMLDEVDRKYKHYYHQMQIVVSSFDMVAGSGAAKPYTAVALQTISRHFRCLKDAISDQV 336 689******************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 6.3E-56 | 189 | 334 | IPR006563 | POX domain |
Pfam | PF07526 | 3.9E-50 | 195 | 333 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.422 | 380 | 443 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-27 | 382 | 454 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.5E-9 | 383 | 447 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.43E-12 | 383 | 444 | No hit | No description |
SuperFamily | SSF46689 | 5.13E-17 | 384 | 450 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.4E-17 | 400 | 439 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 636 aa Download sequence Send to blast |
MSNYYSSPGN ERDSQTMYSP DSGSASYPVS SAALGNLIYS NNASSGPYTE FNGIIQSHQN 60 FMELSGHPSE ISHHSSSTEP NMVTSLTDQH SFGPAKDMRN EMLTHFMDGA HSTGGDLLHN 120 DTHNGAQLEF GLLNSHNSTS VPSAPGQGLS LGLHTHILAP SYPYWSMKPD LMAAQSYQGD 180 HNITKDMQSE ASRAIRNSKY LKAAQELLDE IVSVWKIIKQ NAQKDQVETG KVDGKEAHGV 240 SKSEGLSSNP QETTANAAAE ISAAEKQELQ NKMAKLLAML DEVDRKYKHY YHQMQIVVSS 300 FDMVAGSGAA KPYTAVALQT ISRHFRCLKD AISDQVNVIR KKLGEEENSS GREGKLTRLR 360 YIDQQLRQQR AFQQYGMLQQ NAWRPQRGLP ENSVSILRAW LFEHFLDPYP KDSEKLMLAR 420 QTGLTRSQIS NWFINARVRL WKPMIEDMYK EETGDAELDS NSSSENVPRS KDKVASSEEM 480 QDLKCSMLAE SKGNFGMVDL TGAPTSFHNE VNSDDGFMNL LLKDQRPGET DASLLHDAIA 540 HHSDESARFM AYHLAELGGN GNSNVSLTLG LQHTENSLSA PNTHQPGYVA VREEDIYNTT 600 APPGVATAST DYESTNQMDQ RQRFKQSPLL HDFVA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 4e-15 | 389 | 446 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 4e-15 | 389 | 446 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g12510.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP095604 | 0.0 | FP095604.1 Phyllostachys edulis cDNA clone: bphyem212j15, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003561342.1 | 0.0 | BEL1-like homeodomain protein 7 | ||||
Swissprot | Q9SIW1 | 1e-126 | BLH7_ARATH; BEL1-like homeodomain protein 7 | ||||
TrEMBL | I1GPL1 | 0.0 | I1GPL1_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G12510.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16400.1 | 1e-115 | BEL1-like homeodomain 7 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g12510.4.p |
Entrez Gene | 100829358 |
Publications ? help Back to Top | |||
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