PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi1g12510.1.p

Common Name

BRADI_1g12510, LOC100829358

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

TALE

Protein Properties

Length: 636aa MW: 70449.1 Da PI: 5.9642

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi1g12510.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	27.1	7.3e-09	402	439	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +e+ LA+++gLt +q+++WF N R + Bradi1g12510.1.p 402 FEHflDPYPKDSEKLMLARQTGLTRSQISNWFINARVR 439 6644589*****************************88 PP
2	BELL	123	1.2e-39	265	336	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e+qelq+k akLl +l+eVd++Yk+y++q+q+v+ssF++vag g+akpYt++Al++iSrhFrcLkdai++q+ Bradi1g12510.1.p 265 EKQELQNKMAKLLAMLDEVDRKYKHYYHQMQIVVSSFDMVAGSGAAKPYTAVALQTISRHFRCLKDAISDQV 336 689******************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	6.3E-56	189	334	IPR006563	POX domain
Pfam	PF07526	3.9E-50	195	333	IPR006563	POX domain
PROSITE profile	PS50071	12.422	380	443	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.0E-27	382	454	IPR009057	Homeodomain-like
SMART	SM00389	1.5E-9	383	447	IPR001356	Homeobox domain
CDD	cd00086	2.43E-12	383	444	No hit	No description
SuperFamily	SSF46689	5.13E-17	384	450	IPR009057	Homeodomain-like
Pfam	PF05920	2.4E-17	400	439	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 636 aa Download sequence Send to blast
MSNYYSSPGN ERDSQTMYSP DSGSASYPVS SAALGNLIYS NNASSGPYTE FNGIIQSHQN 60 FMELSGHPSE ISHHSSSTEP NMVTSLTDQH SFGPAKDMRN EMLTHFMDGA HSTGGDLLHN 120 DTHNGAQLEF GLLNSHNSTS VPSAPGQGLS LGLHTHILAP SYPYWSMKPD LMAAQSYQGD 180 HNITKDMQSE ASRAIRNSKY LKAAQELLDE IVSVWKIIKQ NAQKDQVETG KVDGKEAHGV 240 SKSEGLSSNP QETTANAAAE ISAAEKQELQ NKMAKLLAML DEVDRKYKHY YHQMQIVVSS 300 FDMVAGSGAA KPYTAVALQT ISRHFRCLKD AISDQVNVIR KKLGEEENSS GREGKLTRLR 360 YIDQQLRQQR AFQQYGMLQQ NAWRPQRGLP ENSVSILRAW LFEHFLDPYP KDSEKLMLAR 420 QTGLTRSQIS NWFINARVRL WKPMIEDMYK EETGDAELDS NSSSENVPRS KDKVASSEEM 480 QDLKCSMLAE SKGNFGMVDL TGAPTSFHNE VNSDDGFMNL LLKDQRPGET DASLLHDAIA 540 HHSDESARFM AYHLAELGGN GNSNVSLTLG LQHTENSLSA PNTHQPGYVA VREEDIYNTT 600 APPGVATAST DYESTNQMDQ RQRFKQSPLL HDFVA*

Sequence ? help Back to Top

Protein Sequence Length: 636 aa Download sequence Send to blast

MSNYYSSPGN ERDSQTMYSP DSGSASYPVS SAALGNLIYS NNASSGPYTE FNGIIQSHQN  60
FMELSGHPSE ISHHSSSTEP NMVTSLTDQH SFGPAKDMRN EMLTHFMDGA HSTGGDLLHN  120
DTHNGAQLEF GLLNSHNSTS VPSAPGQGLS LGLHTHILAP SYPYWSMKPD LMAAQSYQGD  180
HNITKDMQSE ASRAIRNSKY LKAAQELLDE IVSVWKIIKQ NAQKDQVETG KVDGKEAHGV  240
SKSEGLSSNP QETTANAAAE ISAAEKQELQ NKMAKLLAML DEVDRKYKHY YHQMQIVVSS  300
FDMVAGSGAA KPYTAVALQT ISRHFRCLKD AISDQVNVIR KKLGEEENSS GREGKLTRLR  360
YIDQQLRQQR AFQQYGMLQQ NAWRPQRGLP ENSVSILRAW LFEHFLDPYP KDSEKLMLAR  420
QTGLTRSQIS NWFINARVRL WKPMIEDMYK EETGDAELDS NSSSENVPRS KDKVASSEEM  480
QDLKCSMLAE SKGNFGMVDL TGAPTSFHNE VNSDDGFMNL LLKDQRPGET DASLLHDAIA  540
HHSDESARFM AYHLAELGGN GNSNVSLTLG LQHTENSLSA PNTHQPGYVA VREEDIYNTT  600
APPGVATAST DYESTNQMDQ RQRFKQSPLL HDFVA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrs_A	4e-15	389	446	1	58	Homeobox protein Meis1
4xrs_B	4e-15	389	446	1	58	Homeobox protein Meis1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi1g12510.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP095604	0.0	FP095604.1 Phyllostachys edulis cDNA clone: bphyem212j15, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003561342.1	0.0	BEL1-like homeodomain protein 7
Swissprot	Q9SIW1	1e-126	BLH7_ARATH; BEL1-like homeodomain protein 7
TrEMBL	I1GPL1	0.0	I1GPL1_BRADI; Uncharacterized protein
STRING	BRADI1G12510.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP901	38	131
Representative plant	OGRP133	16	172

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16400.1	1e-115	BEL1-like homeodomain 7

Link Out ? help Back to Top
Phytozome	Bradi1g12510.1.p
Entrez Gene	100829358

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]