PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g11800.4.p | ||||||||
Common Name | BRADI_1g11800, LOC100846874 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | NF-YA | ||||||||
Protein Properties | Length: 263aa MW: 28496.8 Da PI: 9.9309 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 102.6 | 3.7e-32 | 168 | 224 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rak+e e+k +k+rkpylheSRh+hA+rR+Rg+gGrF Bradi1g11800.4.p 168 EEPVYVNAKQYHGILRRRQSRAKAELERKA-IKARKPYLHESRHQHAMRRARGTGGRF 224 69***************************9.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 9.1E-36 | 166 | 227 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 38.039 | 167 | 227 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 2.2E-27 | 169 | 224 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 7.7E-25 | 170 | 192 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 172 | 192 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 7.7E-25 | 201 | 224 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010262 | Biological Process | somatic embryogenesis | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0055046 | Biological Process | microgametogenesis | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MSGMGSRPEG TNLVEPRGQG ALPSGMAMQP WWTGSGLGAV SPAVVAPGSG IGMSLSSNPV 60 GDGATKGKTS DDARADSSED SQRSGEPKDR SFGEEKHHAT SRMPALASDY LAPYSQLELN 120 QPIASATYPY PDAYYTGMVG PYGAQAVTHF QLPGLTQSRM PLPLEISEEP VYVNAKQYHG 180 ILRRRQSRAK AELERKAIKA RKPYLHESRH QHAMRRARGT GGRFLNTKKN ENGASKERAE 240 PNKGDQNSEY HRVPPDLQLR QA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 2e-20 | 168 | 232 | 2 | 66 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g11800.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003560983.1 | 0.0 | nuclear transcription factor Y subunit A-4 | ||||
Refseq | XP_010231280.1 | 0.0 | nuclear transcription factor Y subunit A-4 | ||||
Refseq | XP_014752975.1 | 0.0 | nuclear transcription factor Y subunit A-4 | ||||
Refseq | XP_014752976.1 | 0.0 | nuclear transcription factor Y subunit A-4 | ||||
TrEMBL | I1GPC2 | 0.0 | I1GPC2_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G11800.2 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8205 | 36 | 49 | Representative plant | OGRP680 | 16 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20910.1 | 4e-43 | nuclear factor Y, subunit A9 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g11800.4.p |
Entrez Gene | 100846874 |