 |
Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Bradi1g11310.3.p |
| Common Name | BRADI_1g11310, LOC100834144 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
| Family |
CO-like |
| Protein Properties |
Length: 424aa MW: 46219.6 Da PI: 5.9515 |
| Description |
CO-like family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Bradi1g11310.3.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-B_box | 23.8 | 9.3e-08 | 13 | 56 | 3 | 39 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39
+r C+ + + +++++C ++ +lC+ C + H+ H+v
Bradi1g11310.3.p 13 ARACDGCMRRRARWHCAADDAYLCQACDASVHSAnplarrhHRV 56
578*****************************668888886655 PP
|
| 2 | CCT | 66.2 | 9.4e-23 | 352 | 395 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44
Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk+a
Bradi1g11310.3.p 352 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRA 395
9*****************************************86 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 424 aa
Download sequence Send
to blast |
MTNAGAALGA RTARACDGCM RRRARWHCAA DDAYLCQACD ASVHSANPLA RRHHRVRLSS 60
SASSSSSPAA ASQQADPDAP AWLHGLKRRP RTPRRKPGGI NGSKQQQHDA LGTKAAVAAS 120
APVPDLEAED ESLSGIIMGA GNEVDQVDED DDLLYRVPVF DPMLAELYSH TMPDDDQALE 180
QKPCFAPLLA TDPSSDQYGG VSGLADGTDG FSGFDLVPDM ELASFAADME SLLMGVDSGY 240
DDLGFLDDEK PQMNHLGFDD MQDDFDQSTV APPAPQEEEQ QEDRKRKRPD QMILKLDYEG 300
VISSWTHDGA SPWFYGERPH LDSSDSWLDF PAGSGRGFGL GAAVTAVTGG EREARVSRYR 360
EKRRTRLFAK KIRYEVRKLN AEKRPRMKGR FVKRAALPPL PPRATPMMLA APHGGSAHGR 420
YRL*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 85 | 91 | LKRRPRT |
| 2 | 362 | 378 | RRTRLFAKKIRYEVRKL |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK373259 | 1e-107 | AK373259.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3025G22. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT1G25440.1 | 4e-50 | B-box type zinc finger protein with CCT domain |
