PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g10047.2.p
Common NameBRADI_1g10047, LOC100843507
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family TALE
Protein Properties Length: 347aa    MW: 38494.5 Da    PI: 6.6817
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g10047.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.36e-092703081755
                       HHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
          Homeobox  17 elFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                       e+ +k +yps++++  LA+++gL+ +q+ +WF N+R ++
  Bradi1g10047.2.p 270 EMHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRH 308
                       5566789*****************************885 PP
2ELK37.26.4e-13228249122
               ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                       ELKh+Ll+KYsgyL+sLkqE+s
  Bradi1g10047.2.p 228 ELKHHLLKKYSGYLSSLKQELS 249
                       9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.9E-2188132IPR005540KNOX1
PfamPF037905.4E-2189130IPR005540KNOX1
SMARTSM012565.6E-28139190IPR005541KNOX2
PfamPF037916.9E-23145188IPR005541KNOX2
SMARTSM01188780148168IPR005539ELK domain
PfamPF037897.8E-10228249IPR005539ELK domain
PROSITE profilePS5121311.331228248IPR005539ELK domain
SMARTSM011884.9E-7228249IPR005539ELK domain
PROSITE profilePS5007112.665248311IPR001356Homeobox domain
SuperFamilySSF466891.71E-19249325IPR009057Homeodomain-like
SMARTSM003896.1E-13250315IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.3E-28253312IPR009057Homeodomain-like
CDDcd000861.36E-12260312No hitNo description
PfamPF059201.5E-16268307IPR008422Homeobox KN domain
PROSITE patternPS000270286309IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MEDITAHHFG LGASGHGHGH LPWSSSSLSA VVAPPPQQQQ QHQGYLAPSP LSLNTAAPSH  60
GNPVLQLANG SLLDACAKAK EPYAADVEAI KAKIISHPIY PSLLAAYLDC LKVGAPPEVS  120
ERMSAVARDL ELRQRAGLGG LAAATEPELD QFMEAYSEML VKYREELTRP LQEAMEFLRR  180
VESQLNSLSI NGRSLRNILS SGSSEEDQEG SGGETELPEI DAHGVDQELK HHLLKKYSGY  240
LSSLKQELSK KKKKGKLPKD ARQQLLSWWE MHYKWPYPSE SQKVALAEST GLDLKQINNW  300
FINQRKRHWK PSDEMQFVMM DGYHPPNAAF YMDGHFINDG GLYRFG*
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in meristem formation and/or maintenance. Overexpression causes the hooded phenotype characterized by the appearance of an extra flower of inverse polarity on the lemma. Binds to the DNA sequence 5'-TGAC-3'.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00675ChIP-seqTransfer from GRMZM2G017087Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g10047.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2244990.0AF224499.1 Triticum aestivum KNOTTED-1-like homeobox protein b (knox1b) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010230586.10.0homeobox protein KNOX3
SwissprotQ434840.0KNOX3_HORVU; Homeobox protein KNOX3
TrEMBLA0A0Q3N9P20.0A0A0Q3N9P2_BRADI; Uncharacterized protein
STRINGBRADI1G10047.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98863145
Representative plantOGRP16717148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.19e-94KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Müller KJ, et al.
    The barley Hooded mutation caused by a duplication in a homeobox gene intron.
    Nature, 1995. 374(6524): p. 727-30
    [PMID:7715728]
  2. Krusell L,Rasmussen I,Gausing K
    DNA binding sites recognised in vitro by a knotted class 1 homeodomain protein encoded by the hooded gene, k, in barley (Hordeum vulgare).
    FEBS Lett., 1997. 408(1): p. 25-9
    [PMID:9180261]