PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g09170.1.p
Common NameBRADI_1g09170, LOC100836202
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 422aa    MW: 45052.1 Da    PI: 10.4864
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g09170.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.87.2e-31357414359
                       -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       D+++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp ++++tYeg+Hnh+
  Bradi1g09170.1.p 357 DEFSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPAMLIVTYEGDHNHN 414
                       99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.6E-15309353IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.805.5E-33344414IPR003657WRKY domain
PROSITE profilePS5081129.976350416IPR003657WRKY domain
SuperFamilySSF1182901.7E-26353414IPR003657WRKY domain
SMARTSM007748.9E-38355415IPR003657WRKY domain
PfamPF031062.2E-26357413IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MEGASPPPLP SCFLSARGGG GGGGGSARSR EMEGVEESNR EAVQSCHKVL GLLSNPHGQL  60
VPYKDLMEAT GDAVSKFGSL ASKITNGGGG GLHGHARFRK KIKKPMPMFD SNLFLESPVV  120
AAAEAAAKTS NLSPNTSLQL FPRYQQMEGS SSKDPVRIPA QFPQRLLLEN PVVHSNGLAS  180
GRPLQLVQPV SVAPPAGTPT PALPAAHLHF IQQQQSYQRF QLMHQMNLQS EMMKRGGLGD  240
RGGSTSGGKG VNLKFDSSNG TASSSRSFLS SLSMDGSIAS LDGSRSSRPF QLVSGSQTSS  300
TPELSNMQRR RCAGKEDGSG RCVTGSRCHC AKKRKLRIRR SIKVPAISDK VADIPGDEFS  360
WRKYGQKPIK GSPHPRGYYK CSSVRGCPAR KHVERCVDDP AMLIVTYEGD HNHNRAVPQP  420
A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-20343414272WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g09170.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8404080.0DQ840408.1 Hordeum vulgare subsp. vulgare WRKY transcription factor 9 (WRKY9) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559879.10.0protein WRKY1
SwissprotQ32SG40.0WRKY1_MAIZE; Protein WRKY1
TrEMBLI1GNH30.0I1GNH3_BRADI; Uncharacterized protein
STRINGBRADI1G09170.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102503242
Representative plantOGRP18171541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.12e-51WRKY DNA-binding protein 21