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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g08106.3.p | ||||||||
Common Name | BRADI_1g08106, LOC100838634 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | WRKY | ||||||||
Protein Properties | Length: 315aa MW: 32920.4 Da PI: 8.1048 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 104.1 | 7.4e-33 | 130 | 187 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers++dp+vv++tYeg+H h+ Bradi1g08106.3.p 130 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSDDPSVVITTYEGQHCHH 187 8******************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.7E-33 | 114 | 188 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-28 | 121 | 188 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.964 | 124 | 189 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.6E-39 | 129 | 188 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.3E-26 | 130 | 187 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MAGAAGDRPE GVDWSFAGDG FAEYSSALFA ELGGWSGELP SLDLPAPRAA VPWPEETPAG 60 PAGRSADAGG ASSSSSGDGA SAAAENADKP ASAAAEAASM KPAAATRKGQ KRARQARFAF 120 MTKSEIDHLE DGYRWRKYGQ KAVKNSPFPR SYYRCTNSKC TVKKRVERSS DDPSVVITTY 180 EGQHCHHTAS FQRGFGAGAT PTAMHHIHGA AAVALAEQMA FVSAQQQQQQ LYNQLQAAPL 240 RLRQTNVLIP STESPETGVS STTTASLQQL NGSNELRSPT AAMARSPSSS SVPPSVSFDM 300 GLLGDIVPPG VRHG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-26 | 119 | 186 | 7 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 4e-26 | 119 | 186 | 7 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g08106.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK370299 | 1e-107 | AK370299.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2108G21. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003559239.1 | 0.0 | probable WRKY transcription factor 48 | ||||
Refseq | XP_010229633.1 | 0.0 | probable WRKY transcription factor 48 | ||||
Refseq | XP_010229639.1 | 0.0 | probable WRKY transcription factor 48 | ||||
TrEMBL | I1GN43 | 0.0 | I1GN43_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G08106.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69310.2 | 5e-53 | WRKY DNA-binding protein 57 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g08106.3.p |
Entrez Gene | 100838634 |