PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g08106.2.p
Common NameBRADI_1g08106, LOC100838634
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 315aa    MW: 32920.4 Da    PI: 8.1048
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g08106.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.17.4e-33130187259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers++dp+vv++tYeg+H h+
  Bradi1g08106.2.p 130 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSDDPSVVITTYEGQHCHH 187
                       8******************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-33114188IPR003657WRKY domain
SuperFamilySSF1182901.57E-28121188IPR003657WRKY domain
PROSITE profilePS5081129.964124189IPR003657WRKY domain
SMARTSM007748.6E-39129188IPR003657WRKY domain
PfamPF031064.3E-26130187IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MAGAAGDRPE GVDWSFAGDG FAEYSSALFA ELGGWSGELP SLDLPAPRAA VPWPEETPAG  60
PAGRSADAGG ASSSSSGDGA SAAAENADKP ASAAAEAASM KPAAATRKGQ KRARQARFAF  120
MTKSEIDHLE DGYRWRKYGQ KAVKNSPFPR SYYRCTNSKC TVKKRVERSS DDPSVVITTY  180
EGQHCHHTAS FQRGFGAGAT PTAMHHIHGA AAVALAEQMA FVSAQQQQQQ LYNQLQAAPL  240
RLRQTNVLIP STESPETGVS STTTASLQQL NGSNELRSPT AAMARSPSSS SVPPSVSFDM  300
GLLGDIVPPG VRHG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-26119186774Probable WRKY transcription factor 4
2lex_A4e-26119186774Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g08106.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3702991e-107AK370299.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2108G21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559239.10.0probable WRKY transcription factor 48
RefseqXP_010229633.10.0probable WRKY transcription factor 48
RefseqXP_010229639.10.0probable WRKY transcription factor 48
TrEMBLI1GN430.0I1GN43_BRADI; Uncharacterized protein
STRINGBRADI1G08106.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21253796
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.25e-53WRKY DNA-binding protein 57