PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g07936.1.p
Common NameBRADI_1g07936, LOC104582007
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 285aa    MW: 29020.5 Da    PI: 8.204
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g07936.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH216.1e-07170214554
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       +n+r r RR+++ ++++ L++l+ +      +K + a++L +A  YI+ L
  Bradi1g07936.1.p 170 ANKRPRVRREKLGERIQALQQLVSPF-----GKSDTASVLHEAFGYIRFL 214
                       69***********************8.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.141165214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-12168225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-4170214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-6171220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.07E-5171219No hitNo description
Gene3DG3DSA:4.10.280.101.8E-8174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MVKEEGIVAD AGGGGRGGYL DMLGLGEDAA AMADYYFLYP SPSSSSYVHS SAISTAPSAA  60
VASPGCASYL QPPPPPAAYH NILSFGGNAF GFQYHGGAGG GGQAIPVAVP QKSSPTAECS  120
SSISSMSSSP TATAVSAISI SKPEASKKKG SRSSGQRKAD APAVAAAVPA NKRPRVRREK  180
LGERIQALQQ LVSPFGKSDT ASVLHEAFGY IRFLHGQVQA LSSPYMPCLP SSARGPAAAV  240
ESSSDLRSRG LCLVPVACTE HVTSGVADVW SSSGQQQDEM LQLA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g07936.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229558.10.0transcription factor bHLH113
TrEMBLI1GN250.0I1GN25_BRADI; Uncharacterized protein
STRINGBRADI1G07936.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80822529
Representative plantOGRP13421337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.11e-29bHLH family protein