PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g07247.7.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family TALE
Protein Properties Length: 368aa    MW: 40546.1 Da    PI: 7.9467
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g07247.7.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.92e-092863192255
                       SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
          Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                        +yps++e+  LA+++gL+++q+ +WF N+R ++
  Bradi1g07247.7.p 286 WPYPSETEKIALAESTGLDQKQINNWFINQRKRH 319
                       59*****************************885 PP
2ELK43.27.8e-15239260122
               ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                       ELKhqLlrKY+gy gsL+qEF+
  Bradi1g07247.7.p 239 ELKHQLLRKYGGYVGSLRQEFC 260
                       9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012563.4E-13110210IPR005541KNOX2
SMARTSM012552.1E-4149189IPR005540KNOX1
PfamPF037903.4E-10150175IPR005540KNOX1
PfamPF037912.5E-14173209IPR005541KNOX2
SMARTSM011889.7E-8239260IPR005539ELK domain
PROSITE profilePS5121311.453239259IPR005539ELK domain
PfamPF037891.0E-10239260IPR005539ELK domain
PROSITE profilePS5007112.989259322IPR001356Homeobox domain
SMARTSM003893.3E-13261326IPR001356Homeobox domain
SuperFamilySSF466891.2E-19261332IPR009057Homeodomain-like
CDDcd000862.53E-15262322No hitNo description
Gene3DG3DSA:1.10.10.601.7E-28264326IPR009057Homeodomain-like
PfamPF059207.5E-17279318IPR008422Homeobox KN domain
PROSITE patternPS000270297320IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MGTKPAHQSP THTHHSPLLP PPPPHLLPVR PKYLSPPLLF SRRRQSPLPF LGFLSWPAVS  60
SLIAAMERFR ELGGGGGSSS SSAGSMASFL HLPLRAAASS PELIPPAGGG AEHHGSRLAL  120
HQLLSNPPPS TPQRGHHKDG EISPGPDAEA VKAKIMAHPL YSPLLASYLD CHKEAYCNML  180
AKYREELARP IWEATEFFRS VETQLDSITD SNCEGAGSSE DDLDTSCAEE IDPSAEDREL  240
KHQLLRKYGG YVGSLRQEFC KRRKKGKLPK EARQKLLQWW ELHCKWPYPS ETEKIALAES  300
TGLDQKQINN WFINQRKRHW KPAAEDMPFS MMGGGGFDHD PPGGGAAAPY MVDRPPFMLD  360
GMYRLGS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10488233}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g07247.7.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4434551e-164AB443455.1 Triticum aestivum WRS1 mRNA for homeobox protein, complete cds.
GenBankAK3731811e-164AK373181.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3023C22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229205.20.0homeobox protein rough sheath 1 isoform X4
SwissprotQ10ED21e-87KNOS8_ORYSJ; Homeobox protein knotted-1-like 8
TrEMBLA0A2K2DIF30.0A0A2K2DIF3_BRADI; Uncharacterized protein
STRINGBRADI1G07247.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.12e-69KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]