PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g07247.6.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family TALE
Protein Properties Length: 410aa    MW: 45222.4 Da    PI: 7.7207
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g07247.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.84.3e-093283612255
                       SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
          Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                        +yps++e+  LA+++gL+++q+ +WF N+R ++
  Bradi1g07247.6.p 328 WPYPSETEKIALAESTGLDQKQINNWFINQRKRH 361
                       59*****************************885 PP
2ELK43.18.9e-15281302122
               ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                       ELKhqLlrKY+gy gsL+qEF+
  Bradi1g07247.6.p 281 ELKHQLLRKYGGYVGSLRQEFC 302
                       9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012555.8E-18149193IPR005540KNOX1
PfamPF037901.9E-20150190IPR005540KNOX1
SMARTSM012566.9E-27201252IPR005541KNOX2
PfamPF037916.0E-23206251IPR005541KNOX2
PfamPF037891.2E-10281302IPR005539ELK domain
PROSITE profilePS5121311.453281301IPR005539ELK domain
SMARTSM011889.7E-8281302IPR005539ELK domain
PROSITE profilePS5007112.989301364IPR001356Homeobox domain
SuperFamilySSF466891.41E-19303374IPR009057Homeodomain-like
SMARTSM003893.3E-13303368IPR001356Homeobox domain
CDDcd000861.65E-15304364No hitNo description
Gene3DG3DSA:1.10.10.602.0E-28306368IPR009057Homeodomain-like
PfamPF059208.7E-17321360IPR008422Homeobox KN domain
PROSITE patternPS000270339362IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MGTKPAHQSP THTHHSPLLP PPPPHLLPVR PKYLSPPLLF SRRRQSPLPF LGFLSWPAVS  60
SLIAAMERFR ELGGGGGSSS SSAGSMASFL HLPLRAAASS PELIPPAGGG AEHHGSRLAL  120
HQLLSNPPPS TPQRGHHKDG EISPGPDAEA VKAKIMAHPL YSPLLASYLD CHKVGAPPDV  180
LDRLSAVAAK QLDAAAERRR HREPPRVDPE LDQFMEAYCN MLAKYREELA RPIWEATEFF  240
RSVETQLDSI TDSNCEGAGS SEDDLDTSCA EEIDPSAEDR ELKHQLLRKY GGYVGSLRQE  300
FCKRRKKGKL PKEARQKLLQ WWELHCKWPY PSETEKIALA ESTGLDQKQI NNWFINQRKR  360
HWKPAAEDMP FSMMGGGGFD HDPPGGGAAA PYMVDRPPFM LDGMYRLGS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10488233}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g07247.6.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4434550.0AB443455.1 Triticum aestivum WRS1 mRNA for homeobox protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229205.20.0homeobox protein rough sheath 1 isoform X4
SwissprotQ10ED21e-111KNOS8_ORYSJ; Homeobox protein knotted-1-like 8
TrEMBLA0A2K2DIG50.0A0A2K2DIG5_BRADI; Uncharacterized protein
STRINGBRADI1G07247.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.15e-86KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]