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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g06225.1.p | ||||||||
Common Name | BRADI_1g06225, LOC100823205 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | LBD | ||||||||
Protein Properties | Length: 144aa MW: 15949.2 Da PI: 8.043 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 119.1 | 2.5e-37 | 13 | 113 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrr+Ca+dCvlap+fpa++p+++a+v+++FGa nv ++l++lp eer++a++++v eA ra+dPvyG++gvi++lq++++ ++ e Bradi1g06225.1.p 13 RCAACKYLRRRCARDCVLAPHFPASDPQRYACVQRFFGAGNVARMLQQLPAEERRAAADAMVVEASRRAQDPVYGCAGVIHRLQEEIRAVECE 105 6******************************************************************************************** PP DUF260 94 lallkeel 101 la++++++ Bradi1g06225.1.p 106 LARTRAQI 113 **999885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.839 | 12 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.3E-36 | 13 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016020 | Cellular Component | membrane |
Sequence ? help Back to Top |
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Protein Sequence Length: 144 aa Download sequence Send to blast |
MSASLDTEGN PRRCAACKYL RRRCARDCVL APHFPASDPQ RYACVQRFFG AGNVARMLQQ 60 LPAEERRAAA DAMVVEASRR AQDPVYGCAG VIHRLQEEIR AVECELARTR AQIAMNQATR 120 LPDLRDDDQQ MPSVELLQGF LSG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-30 | 3 | 108 | 1 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-30 | 3 | 108 | 1 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g06225.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003559344.1 | 1e-100 | LOB domain-containing protein 24 | ||||
Swissprot | P59468 | 1e-45 | LBD24_ARATH; LOB domain-containing protein 24 | ||||
TrEMBL | A0A0Q3J4B9 | 1e-98 | A0A0Q3J4B9_BRADI; Uncharacterized protein | ||||
STRING | OGLUM03G36620.1 | 5e-53 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5282 | 35 | 62 | Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 4e-48 | LOB domain-containing protein 24 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g06225.1.p |
Entrez Gene | 100823205 |